Os04g0479200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0479200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.56 | 0.238 | 11.1 | 0.0408 | 0.276 | 0.581 | 0.127 | 0.288 | -0.0493 | 6.16 | 24.33 | 852 | -- | -- |
| 25.67 | 0.236 | 11.1 | 0.0875 | 0.272 | 0.545 | 0.166 | -- | -0.0397 | 6.19 | 24.6 | 824 | -- | -- |
| 25.6 | 0.236 | 11.1 | 0.0425 | 0.278 | 0.585 | -- | 0.302 | -0.0526 | 6.21 | 24.1 | 854 | -- | -- |
| 25.72 | 0.236 | 11.1 | 0.0904 | 0.274 | 0.544 | -- | -- | -0.0395 | 6.19 | 24.61 | 825 | -- | -- |
| 26.76 | 0.241 | 11.1 | 0.13 | -- | 0.731 | -- | -0.164 | -0.0309 | -- | 43.44 | 518 | -- | -- |
| 29.95 | 0.257 | 11.1 | -0.0688 | 0.304 | -- | 0.139 | -- | -0.148 | 7.03 | -- | -- | -- | -- |
| 30 | 0.256 | 11.1 | -0.0661 | 0.304 | -- | -- | -- | -0.149 | 7.05 | -- | -- | -- | -- |
| 26.78 | 0.241 | 11.1 | 0.103 | -- | 0.728 | -- | -- | -0.0379 | -- | 57.14 | 520 | -- | -- |
| 25.91 | 0.237 | 11.1 | -- | 0.262 | 0.522 | -- | -- | -0.0459 | 6.25 | 24.68 | 777 | -- | -- |
| 34.88 | 0.276 | 11.1 | -0.0601 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 30.12 | 0.257 | 11.1 | -- | 0.304 | -- | -- | -- | -0.141 | 7.06 | -- | -- | -- | -- |
| 27.03 | 0.242 | 11.1 | -- | -- | 0.692 | -- | -- | -0.0541 | -- | 37.41 | 501 | -- | -- |
| 34.98 | 0.276 | 11.1 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.77 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 2 | 23.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 3 | 24.08 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 4 | 24.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 10 | 24.83 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 12 | 24.88 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 16 | 24.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 19 | 25.13 | wind | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 20 | 25.16 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 24 | 25.21 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 26 | 25.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 27 | 25.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 32 | 25.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 41 | 25.31 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 69 | 25.41 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 98 | 25.49 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 125 | 25.54 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 130 | 25.55 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 159 | 25.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 169 | 25.61 | temperature | 25 | 90 | > th | dose independent | rect. | 10 | 9 |
| 173 | 25.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 194 | 25.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 195 | 25.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 204 | 25.64 | wind | 5 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 231 | 25.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 240 | 25.67 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 243 | 25.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 246 | 25.68 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 268 | 25.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 304 | 25.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 306 | 25.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 325 | 25.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 343 | 25.76 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 349 | 25.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 352 | 25.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 355 | 25.77 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 373 | 25.78 | wind | 1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 402 | 25.80 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 448 | 25.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 449 | 25.83 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 455 | 25.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 468 | 25.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 559 | 25.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 626 | 25.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 667 | 25.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 669 | 25.94 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 693 | 25.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 769 | 25.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 773 | 25.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 802 | 25.99 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 825 | 26.00 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 846 | 26.01 | wind | 1 | 43200 | > th | dose independent | sin | 9 | NA |
| 867 | 26.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 874 | 26.02 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 925 | 26.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 972 | 26.06 | temperature | 10 | 90 | > th | dose dependent | sin | 20 | NA |
| 993 | 26.07 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 4 |