Os02g0595500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0595500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.18 | 0.189 | 10.8 | 0.256 | 1.16 | -0.158 | -0.0193 | 3.63 | 0.00763 | 7.04 | 29.28 | 4014 | -- | -- |
| 16.83 | 0.191 | 10.9 | -0.3 | 1.16 | 0.278 | 0.048 | -- | -0.00439 | 6.99 | 29.61 | 4311 | -- | -- |
| 16.18 | 0.187 | 10.8 | 0.246 | 1.16 | -0.147 | -- | 3.54 | 0.0104 | 7.05 | 29.2 | 4013 | -- | -- |
| 16.75 | 0.191 | 10.9 | -0.338 | 1.17 | 0.279 | -- | -- | -0.0131 | 7.04 | 29.32 | 4324 | -- | -- |
| 86.5 | 0.433 | 10.8 | 0.545 | -- | -0.3 | -- | 4.61 | 0.0701 | -- | 28.59 | 4004 | -- | -- |
| 19.47 | 0.207 | 10.9 | -0.269 | 1.17 | -- | -0.0151 | -- | -0.0543 | 6.97 | -- | -- | -- | -- |
| 19.47 | 0.207 | 10.9 | -0.269 | 1.17 | -- | -- | -- | -0.0543 | 6.97 | -- | -- | -- | -- |
| 88.35 | 0.438 | 10.9 | -0.323 | -- | 0.289 | -- | -- | -0.00448 | -- | 28.37 | 4279 | -- | -- |
| 19.64 | 0.206 | 10.8 | -- | 1.16 | 0.216 | -- | -- | 0.00951 | 7.04 | 29.35 | 4307 | -- | -- |
| 91.29 | 0.446 | 10.9 | -0.245 | -- | -- | -- | -- | -0.0326 | -- | -- | -- | -- | -- |
| 21.38 | 0.216 | 10.9 | -- | 1.17 | -- | -- | -- | -0.0243 | 6.98 | -- | -- | -- | -- |
| 90.78 | 0.444 | 10.9 | -- | -- | 0.191 | -- | -- | -0.0199 | -- | 27.4 | 5672 | -- | -- |
| 92.87 | 0.45 | 10.9 | -- | -- | -- | -- | -- | -0.00542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 10 | 15.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 14 | 15.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 20 | 15.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 37 | 15.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 39 | 15.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 52 | 15.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 69 | 15.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 72 | 15.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 74 | 15.91 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 75 | 15.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 80 | 15.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 89 | 15.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 99 | 15.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 100 | 15.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 101 | 15.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 120 | 15.96 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 122 | 15.96 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 197 | 15.99 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 204 | 15.99 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 254 | 16.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 317 | 16.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 322 | 16.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 342 | 16.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 350 | 16.09 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 428 | 16.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 464 | 16.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 468 | 16.13 | radiation | 20 | 30 | < th | dose dependent | rect. | 6 | 12 |
| 488 | 16.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 525 | 16.16 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 567 | 16.18 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 661 | 16.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 687 | 16.19 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 708 | 16.20 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 731 | 16.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 764 | 16.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 781 | 16.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 915 | 16.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 23 |