BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0592400 Os02g0592400|AK105384
(107 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0592400 Hypoxia induced protein conserved region famil... 221 7e-59
Os07g0673900 Hypoxia induced protein conserved region famil... 110 3e-25
Os12g0111600 Hypoxia induced protein conserved region famil... 63 6e-11
>Os02g0592400 Hypoxia induced protein conserved region family protein
Length = 107
Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MGEEAAKQMAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIH 60
MGEEAAKQMAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIH
Sbjct: 1 MGEEAAKQMAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIH 60
Query: 61 ARLHAQALTLAALVGSAMVEYYDAKYGTSGPKVDKYTSQYLAHSHKD 107
ARLHAQALTLAALVGSAMVEYYDAKYGTSGPKVDKYTSQYLAHSHKD
Sbjct: 61 ARLHAQALTLAALVGSAMVEYYDAKYGTSGPKVDKYTSQYLAHSHKD 107
>Os07g0673900 Hypoxia induced protein conserved region family protein
Length = 130
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
Query: 8 QMAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIHARLHAQA 67
+MAE ++SMR+WV+DHKLRAVG LWLTG++SSIAYNWSRP MKTSVKIIHARLHAQA
Sbjct: 29 EMAEEKSTMQSMREWVVDHKLRAVGTLWLTGVASSIAYNWSRPGMKTSVKIIHARLHAQA 88
Query: 68 LTLAALVGSAMVEYYDAKYGTSGPKVDKYTSQYLA 102
LTLAAL GSA+VEYYD + G SG +V +Y Q++
Sbjct: 89 LTLAALAGSALVEYYDHRSG-SGSRVHQYAKQFIT 122
>Os12g0111600 Hypoxia induced protein conserved region family protein
Length = 105
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 18 SMRKWVIDHKLRAVGCLWLTGISSSIAYNWSR-PNMKTSVKIIHARLHAQALTLAALVGS 76
S++ WV +HKL ++G LW T + +S+AY + P M+ +IHARLHAQALTLA L G+
Sbjct: 7 SVQSWVEEHKLASIGGLWATAVGASVAYGRRKTPQMR----LIHARLHAQALTLAVLGGA 62
Query: 77 AMVEYY 82
A+ +Y
Sbjct: 63 ALAHHY 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.127 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,481,521
Number of extensions: 106980
Number of successful extensions: 238
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)