Os07g0673900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypoxia induced protein conserved region family protein.
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Os07g0673900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypoxia induced protein conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.18 | 0.764 | 7.9 | -1.96 | 1.75 | 2.48 | -1.58 | 1.41 | -0.863 | 7.25 | 29.6 | 723 | 17 | 3 |
| 274 | 0.771 | 7.89 | -1.81 | 1.83 | 2.54 | -2.05 | -- | -0.889 | 7.4 | 29.6 | 723 | 17 | 3.05 |
| 269.63 | 0.765 | 7.9 | -2.01 | 1.72 | 2.49 | -- | 1.79 | -0.866 | 7.33 | 29.59 | 730 | 17 | 3.02 |
| 287.83 | 0.79 | 7.9 | -1.94 | 1.74 | 2.54 | -- | -- | -0.874 | 7.49 | 29.5 | 730 | 17 | 3.02 |
| 324.68 | 0.839 | 7.9 | -1.98 | -- | 2.8 | -- | 0.539 | -0.898 | -- | 29.51 | 897 | 16.6 | 5.52 |
| 401.85 | 0.94 | 7.88 | -2.2 | 2.78 | -- | 0.266 | -- | -0.659 | 3.01 | -- | -- | -- | -- |
| 402.08 | 0.939 | 7.88 | -2.21 | 2.78 | -- | -- | -- | -0.66 | 3.02 | -- | -- | -- | -- |
| 324.25 | 0.839 | 7.9 | -1.91 | -- | 2.91 | -- | -- | -0.879 | -- | 29.7 | 898 | 16.3 | 6.35 |
| 385.66 | 0.915 | 7.87 | -- | 1.69 | 2.59 | -- | -- | -0.712 | 7.54 | 29.31 | 732 | 17 | 2.98 |
| 845.08 | 1.36 | 7.87 | -2.09 | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
| 530.33 | 1.08 | 7.83 | -- | 2.74 | -- | -- | -- | -0.415 | 3.02 | -- | -- | -- | -- |
| 417.01 | 0.951 | 7.94 | -- | -- | 3.15 | -- | -- | -0.799 | -- | 29.65 | 947 | 15.5 | 6.9 |
| 960.03 | 1.45 | 7.82 | -- | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.08 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 2 | 275.05 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 7 | 282.82 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 2 |
| 9 | 285.57 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 26 | 294.74 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 29 | 296.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 31 | 296.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 73 | 297.85 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 97 | 298.97 | temperature | 25 | 14400 | > th | dose dependent | sin | 11 | NA |
| 106 | 299.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 109 | 299.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 113 | 299.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 121 | 299.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 134 | 299.81 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 176 | 300.58 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 215 | 300.76 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 247 | 301.20 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 252 | 301.32 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 253 | 301.32 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 276 | 301.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 317 | 301.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 320 | 301.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 321 | 301.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 324 | 301.78 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 334 | 301.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 363 | 301.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 367 | 301.96 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 373 | 302.02 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 388 | 302.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 473 | 302.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 482 | 302.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 512 | 302.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 571 | 302.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 619 | 302.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 620 | 302.66 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 634 | 302.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 658 | 302.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 742 | 302.81 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 775 | 302.95 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 825 | 303.04 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 845 | 303.06 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 939 | 303.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 940 | 303.08 | temperature | 25 | 14400 | > th | dose independent | sin | 10 | NA |
| 959 | 303.17 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 5 |