BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0673900 Os07g0673900|AK120859
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27760.1  | chr5:9830396-9831559 FORWARD LENGTH=97              97   2e-21
AT3G05550.1  | chr3:1612860-1613748 FORWARD LENGTH=98              91   1e-19

>AT5G27760.1 | chr5:9830396-9831559 FORWARD LENGTH=97
          Length = 96

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query: 30  MAEEKSTMQSMREWVVDHKLRAVGTLWLTGVASSIAYNWSRPGMKTSVKIIHXXXXXXXX 89
           MAE K+ +  +REW+++HKLR VG LWL+G++ SIAYNWS+P MKTSV+IIH        
Sbjct: 1   MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query: 90  XXXXXXXXXXVEYYDHRSGSGSRVHQYAK 118
                     VEYYDH+SG+  R+ ++ K
Sbjct: 61  TLAALAGAAAVEYYDHKSGATDRIPKFLK 89



>AT3G05550.1 | chr3:1612860-1613748 FORWARD LENGTH=98
          Length = 97

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 30  MAEEKSTMQSMREWVVDHKLRAVGTLWLTGVASSIAYNWSRPGMKTSVKIIHXXXXXXXX 89
           M E K+  + +R+WV DHKLR VG LWL+G+  SIAYNWS+P MKTSVKIIH        
Sbjct: 1   MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query: 90  XXXXXXXXXXVEYYDHRSGSGSRVHQYAKQFITPESNPQKE 130
                     VEYYDH++ + +R   Y K F+ PE+   K+
Sbjct: 61  TLAALAGAAVVEYYDHKTEATNR---YPK-FLPPENLSHKD 97



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,620,378
Number of extensions: 77055
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)