Os12g0111600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypoxia induced protein conserved region family protein.
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Os12g0111600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypoxia induced protein conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.95 | 0.72 | 9.63 | -0.0207 | 2.43 | 3 | -1.82 | 3.94 | 0.873 | 23.1 | 2 | 1 | 19 | 1 |
| 244.59 | 0.728 | 9.64 | 0.0352 | 2.43 | 3.13 | -1.48 | -- | 0.842 | 23.2 | 60.49 | 2 | 19 | 1.36 |
| 248.34 | 0.734 | 9.63 | 0.0621 | 2.46 | 2.87 | -- | 3.01 | 0.891 | 23 | 59.57 | 2 | 19.3 | 0.803 |
| 253.41 | 0.741 | 9.63 | 0.0772 | 2.44 | 3.05 | -- | -- | 0.864 | 23.1 | 60.69 | 2 | 19 | 1.32 |
| 604.57 | 1.15 | 9.55 | 0.133 | -- | 3.92 | -- | 2.73 | 0.969 | -- | 49.19 | 4 | 19.3 | 1.41 |
| 321.8 | 0.841 | 9.66 | 0.0579 | 2.72 | -- | -1.19 | -- | 0.795 | 22.7 | -- | -- | -- | -- |
| 327.57 | 0.848 | 9.66 | 0.108 | 2.72 | -- | -- | -- | 0.8 | 22.6 | -- | -- | -- | -- |
| 598.22 | 1.14 | 9.56 | 0.171 | -- | 4.16 | -- | -- | 0.905 | -- | 53.31 | 3 | 19 | 1.02 |
| 253.59 | 0.742 | 9.64 | -- | 2.43 | 3.09 | -- | -- | 0.852 | 23.1 | 61.41 | 2 | 19 | 1.41 |
| 784.42 | 1.31 | 9.59 | 0.158 | -- | -- | -- | -- | 0.813 | -- | -- | -- | -- | -- |
| 327.87 | 0.847 | 9.66 | -- | 2.73 | -- | -- | -- | 0.788 | 22.6 | -- | -- | -- | -- |
| 591.39 | 1.13 | 9.59 | -- | -- | 4.13 | -- | -- | 0.814 | -- | 52.03 | 3 | 19 | 1.97 |
| 785.08 | 1.31 | 9.59 | -- | -- | -- | -- | -- | 0.796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.95 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 9 | 240.09 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 13 | 242.62 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 22 | 243.56 | radiation | 1.0 | 90 | < th | dose independent | rect. | 6 | 14 |
| 28 | 244.99 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 3 |
| 32 | 246.51 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 9 |
| 37 | 247.28 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 23 |
| 38 | 247.28 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 39 | 247.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 3 |
| 40 | 247.35 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 2 |
| 42 | 247.57 | humidity | 70.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 45 | 248.03 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 57 | 249.31 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 59 | 249.60 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 63 | 249.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 67 | 249.68 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 73 | 249.68 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 77 | 249.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 97 | 249.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 100 | 249.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 105 | 249.76 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 114 | 250.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 2 |
| 125 | 251.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 130 | 251.63 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 131 | 251.63 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 133 | 251.63 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 138 | 251.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 144 | 251.72 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 145 | 251.72 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 146 | 251.81 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 152 | 252.23 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 23 |
| 168 | 253.60 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 171 | 253.84 | wind | 9.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 234 | 255.78 | radiation | 30.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 255 | 256.91 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 13 | 7 |
| 351 | 258.10 | humidity | 80.0 | 30 | > th | dose independent | rect. | 8 | 12 |
| 407 | 259.22 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 422 | 259.73 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 424 | 259.79 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 1 |
| 425 | 259.79 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 443 | 260.49 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 478 | 261.33 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 525 | 262.47 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 7 |
| 589 | 263.89 | radiation | 1.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 595 | 264.05 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 606 | 264.30 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 612 | 264.40 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 641 | 265.12 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 668 | 265.53 | radiation | 10.0 | 90 | < th | dose dependent | no | NA | NA |
| 689 | 265.92 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 701 | 266.16 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 731 | 266.44 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 743 | 266.64 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 749 | 266.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 752 | 266.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 761 | 266.95 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 772 | 267.09 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 23 |
| 776 | 267.13 | radiation | 1.0 | 90 | < th | dose independent | sin | 22 | NA |
| 813 | 267.59 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 820 | 267.67 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 894 | 268.28 | radiation | 30.0 | 720 | < th | dose independent | rect. | 14 | 15 |
| 911 | 268.44 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 12 |