Os02g0592400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypoxia induced protein conserved region family protein.
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Os02g0592400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypoxia induced protein conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.88 | 0.378 | 9.95 | -1.17 | 1.08 | 0.441 | -0.483 | 1.27 | -0.675 | 8.43 | 999 | 4570 | -- | -- |
| 64.38 | 0.374 | 9.96 | -1.27 | 1.08 | 0.691 | -0.46 | -- | -0.645 | 8.39 | 1000 | 12455 | -- | -- |
| 65.62 | 0.377 | 9.95 | -1.18 | 1.08 | 0.444 | -- | 1.25 | -0.673 | 8.44 | 999 | 4570 | -- | -- |
| 64.73 | 0.375 | 9.95 | -1.25 | 1.09 | 0.689 | -- | -- | -0.611 | 8.36 | 1002 | 12867 | -- | -- |
| 131.11 | 0.533 | 9.97 | -1.2 | -- | 0.439 | -- | 1.14 | -0.656 | -- | 998.5 | 4580 | -- | -- |
| 75.9 | 0.408 | 9.97 | -1.12 | 1.08 | -- | -0.497 | -- | -0.721 | 8.44 | -- | -- | -- | -- |
| 76.69 | 0.41 | 9.97 | -1.13 | 1.08 | -- | -- | -- | -0.721 | 8.44 | -- | -- | -- | -- |
| 129.34 | 0.53 | 9.96 | -1.21 | -- | 0.753 | -- | -- | -0.563 | -- | 1002 | 12830 | -- | -- |
| 101.62 | 0.47 | 9.93 | -- | 1.06 | 0.552 | -- | -- | -0.486 | 8.39 | 1003 | 17517 | -- | -- |
| 142.03 | 0.557 | 10 | -1.13 | -- | -- | -- | -- | -0.71 | -- | -- | -- | -- | -- |
| 110.56 | 0.492 | 9.95 | -- | 1.08 | -- | -- | -- | -0.595 | 8.52 | -- | -- | -- | -- |
| 144.41 | 0.56 | 9.92 | -- | -- | 0.699 | -- | -- | -0.353 | -- | 993.9 | 47520 | -- | -- |
| 175.61 | 0.619 | 9.97 | -- | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.12 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 2 | 63.12 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 63.26 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 4 | 63.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 8 | 64.04 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 24 | 64.35 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 43 | 64.43 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 74 | 64.47 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 189 | 64.57 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 196 | 64.57 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 198 | 64.58 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 290 | 64.62 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 300 | 64.63 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 338 | 64.66 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 339 | 64.66 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 444 | 64.73 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 482 | 64.76 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 527 | 64.81 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 561 | 64.86 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 587 | 64.90 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 616 | 64.93 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 630 | 64.95 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 660 | 64.98 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 664 | 64.98 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 694 | 65.01 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 726 | 65.03 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 802 | 65.08 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 804 | 65.08 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 821 | 65.09 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 841 | 65.10 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 939 | 65.14 | atmosphere | 1000.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 985 | 65.16 | atmosphere | 1000.0 | 4320 | > th | dose independent | sin | 3 | NA |