BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0592400 Os02g0592400|AK105384
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05550.1  | chr3:1612860-1613748 FORWARD LENGTH=98              98   8e-22
AT5G27760.1  | chr5:9830396-9831559 FORWARD LENGTH=97              97   2e-21

>AT3G05550.1 | chr3:1612860-1613748 FORWARD LENGTH=98
          Length = 97

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 9  MAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIHARLHAQAL 68
          M E+  K E +RKWV DHKLR VGCLWL+GI+ SIAYNWS+P MKTSVKIIHARLHAQAL
Sbjct: 1  MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query: 69 TLAALVGSAMVEYYDAK 85
          TLAAL G+A+VEYYD K
Sbjct: 61 TLAALAGAAVVEYYDHK 77



>AT5G27760.1 | chr5:9830396-9831559 FORWARD LENGTH=97
          Length = 96

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 68/81 (83%)

Query: 9  MAEAPGKIESMRKWVIDHKLRAVGCLWLTGISSSIAYNWSRPNMKTSVKIIHARLHAQAL 68
          MAE   K+  +R+W+I+HKLR VGCLWL+GIS SIAYNWS+P MKTSV+IIHARLHAQAL
Sbjct: 1  MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query: 69 TLAALVGSAMVEYYDAKYGTS 89
          TLAAL G+A VEYYD K G +
Sbjct: 61 TLAALAGAAAVEYYDHKSGAT 81



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.127    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,211,857
Number of extensions: 67866
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)