BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0584800 Os02g0584800|J080302H06
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0584800  Heavy metal transport/detoxification protein d...   171   1e-43
Os02g0584700  Heavy metal transport/detoxification protein d...   126   4e-30
Os02g0584600                                                      122   7e-29
Os02g0585100  Heavy metal transport/detoxification protein d...    67   3e-12

>Os02g0584800 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 121

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 89/121 (73%)

Query: 1   MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAXXXXXXXXXXXXXXXSIKLTAAL 60
           MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALA               SIKLTAAL
Sbjct: 1   MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAGDGKDQVVVVGDGVDSIKLTAAL 60

Query: 61  RKKVGHATLVTVGXXXXXXXXXXXXXXXXXYPWSYHPAYTYAPPAQHVFYQQYPASSPWW 120
           RKKVGHATLVTVG                 YPWSYHPAYTYAPPAQHVFYQQYPASSPWW
Sbjct: 61  RKKVGHATLVTVGEVKKEEKKPEPAAAAVEYPWSYHPAYTYAPPAQHVFYQQYPASSPWW 120

Query: 121 C 121
           C
Sbjct: 121 C 121



>Os02g0584700 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 117

 Score =  126 bits (316), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 78/117 (66%), Gaps = 4/117 (3%)

Query: 1   MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAXXXXXXXXXXXXXXXSIKLTAAL 60
           MAKQKIVIKV M+ DKCRSKAMALVA+T GVDSVALA               SIKLT AL
Sbjct: 1   MAKQKIVIKVNMASDKCRSKAMALVASTSGVDSVALAGDGKDQVVVVGDGVDSIKLTTAL 60

Query: 61  RKKVGHATLVTVGXXXXXXXXXXXXXXXXXYPWSYHPAYTYAPPAQHVFYQQYPASS 117
           RKKVGHATL+TVG                 YPWSYHP YT+APPAQHV Y QYPASS
Sbjct: 61  RKKVGHATLMTVG--EVKKEEKKPEHAVVEYPWSYHP-YTFAPPAQHVVY-QYPASS 113



>Os02g0584600 
          Length = 119

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 77/120 (64%), Gaps = 2/120 (1%)

Query: 1   MAKQKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAXXXXXXXXXXXXXXXSIKLTAAL 60
           MAKQKIVIK+ M+ DKCRSKAMALVA+T GVDSVALA               SI+LT AL
Sbjct: 1   MAKQKIVIKMNMASDKCRSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTAL 60

Query: 61  RKKVGHATLVTVGXXXXXXXXXXXXXXXXXYPWSYHPAYTYAPPAQHVFYQQYPASSPWW 120
           RKKVGHATL+TVG                 YPW+ +P Y YAPP QHV Y QYPASS WW
Sbjct: 61  RKKVGHATLMTVGEDKKEEKKPEPAVVEYPYPWNCYP-YGYAPPPQHVVY-QYPASSSWW 118



>Os02g0585100 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 170

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 4   QKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAXXXXXXXXXXXXXXXSIKLTAALRKK 63
           QKIVIKV M  DKCR KAM+LVAATGGV SV LA                 KLT+ LR+K
Sbjct: 64  QKIVIKVHMGSDKCRRKAMSLVAATGGVVSVELAGDDRSKVVVVGEVDSV-KLTSLLRRK 122

Query: 64  VGHATLVTVG 73
           VG A LV VG
Sbjct: 123 VGPAELVEVG 132



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.129    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,696,704
Number of extensions: 55140
Number of successful extensions: 203
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 5
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)