BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0582600 Os02g0582600|AK102380
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0582600 Heavy metal transport/detoxification protein d... 246 1e-65
Os04g0467900 101 4e-22
Os04g0468600 Heavy metal transport/detoxification protein d... 101 5e-22
Os04g0468000 88 6e-18
Os02g0582800 Conserved hypothetical protein 75 6e-14
Os09g0327800 Disease resistance protein family protein 70 1e-12
Os02g0584600 66 2e-11
Os02g0585200 Heavy metal transport/detoxification protein d... 65 4e-11
>Os02g0582600 Heavy metal transport/detoxification protein domain containing
protein
Length = 246
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 138/246 (56%)
Query: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK 60
MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK
Sbjct: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK 60
Query: 61 RKVGSGEIVELRTVDTFEXXXXXXXXXXXXXXXXXXSKDXXXXXXXXXXXXSPYHYQPSX 120
RKVGSGEIVELRTVDTFE SKD SPYHYQPS
Sbjct: 61 RKVGSGEIVELRTVDTFEAAAAMFPGGMIMPPPAPGSKDAAAARAMATTRASPYHYQPSP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAMAAXXXXXXXXXXXXXRAVALSHPAIY 180
MAMAA RAVALSHPAIY
Sbjct: 121 YGPYHQQQQWQPPYAMAPSPYAYPYQYHPSPMAMAAGGGGYGYGGSSYSRAVALSHPAIY 180
Query: 181 SPLVEKHDYHPMNHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRSRRHHESDS 240
SPLVEKHDYHPMNHS VSRSRRHHESDS
Sbjct: 181 SPLVEKHDYHPMNHSTTTKKKTTTTTTTTGAGTGRAAAAAAGGKTFKAVSRSRRHHESDS 240
Query: 241 NACCIL 246
NACCIL
Sbjct: 241 NACCIL 246
>Os04g0467900
Length = 229
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%)
Query: 3 KEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLKRK 62
KEIIIR+ +DKC KA+K AA VSGV+SVT+AG DR+LLLVIG+GVD +KLTKKL+R+
Sbjct: 2 KEIIIRMRPDSDKCHHKALKVAAAVSGVESVTVAGRDRDLLLVIGDGVDESKLTKKLRRE 61
Query: 63 VGSGEIVELRTVD 75
VG EI+ELRT+D
Sbjct: 62 VGEAEILELRTLD 74
>Os04g0468600 Heavy metal transport/detoxification protein domain containing
protein
Length = 191
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
Query: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK 60
M+KEI+IR+ ++K KKA+K AA VSGV+SVTLAG D+NLLLVIG GVD+N LT+KL+
Sbjct: 1 MRKEIVIRLQ-SSEKGHKKAIKVAAAVSGVESVTLAGEDKNLLLVIGFGVDSNDLTEKLR 59
Query: 61 RKVGSGEIVELRTVDTFE 78
RKVG E+VELRTVD E
Sbjct: 60 RKVGHAEVVELRTVDADE 77
>Os04g0468000
Length = 239
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEG-VDTNKLTKKL 59
M+ EI+I I + +++C+ KA+K A+TV+GVQSVT+AG +RNLLLVIG+G VD ++LT++L
Sbjct: 24 MRTEILIWIQLSSERCRSKALKVASTVNGVQSVTVAGEERNLLLVIGDGVVDASRLTRRL 83
Query: 60 KRKVGSGEIVELRT 73
+ VG EIVEL T
Sbjct: 84 RNHVGYAEIVELTT 97
>Os02g0582800 Conserved hypothetical protein
Length = 176
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 1 MKKEIIIRISVKTDK-CQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKL 59
M+ E++IR+ ++K KAMK AA + GV+SVTLAG RNLL V+G GVD+N LT +L
Sbjct: 1 MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL 60
Query: 60 KRKVGSGEIVELRTV-DTF 77
+RKVG +IVELRT+ DT+
Sbjct: 61 RRKVGHADIVELRTLHDTY 79
>Os09g0327800 Disease resistance protein family protein
Length = 1110
Score = 70.1 bits (170), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 26 TVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLKRKVGSGEIVE 70
+V+GVQSVTL GG+RNLL+VIGEGVDTNKL KKL+ VG+ +IVE
Sbjct: 1012 SVTGVQSVTLCGGNRNLLMVIGEGVDTNKLLKKLRNNVGAADIVE 1056
>Os02g0584600
Length = 119
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 49/63 (77%)
Query: 2 KKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLKR 61
K++I+I++++ +DKC+ KAM A+ +GV SV LAG ++ L+V+G+GVD+ +LT L++
Sbjct: 3 KQKIVIKMNMASDKCRSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTALRK 62
Query: 62 KVG 64
KVG
Sbjct: 63 KVG 65
>Os02g0585200 Heavy metal transport/detoxification protein domain containing
protein
Length = 133
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK 60
M ++I+I++ + +DKC++KAM AA+ GV SV LAG DR+ ++V+G+ VD+ LT L+
Sbjct: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALR 59
Query: 61 RKV-GSGEIVEL 71
RKV GS E+VE+
Sbjct: 60 RKVDGSAELVEV 71
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,054,042
Number of extensions: 94782
Number of successful extensions: 332
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 11
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)