Os09g0327800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0327800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.19 | 0.339 | 8.02 | 0.818 | 0.502 | -0.521 | -0.109 | 0.64 | -0.185 | 19 | 20.05 | 37 | -- | -- |
| 53.76 | 0.341 | 8.03 | 0.832 | 0.503 | -0.512 | -0.327 | -- | -0.191 | 19.1 | 20.05 | 47 | -- | -- |
| 52.1 | 0.336 | 8.03 | 0.839 | 0.507 | -0.545 | -- | 0.692 | -0.191 | 19 | 20.33 | 47 | -- | -- |
| 53.98 | 0.342 | 8.03 | 0.845 | 0.501 | -0.544 | -- | -- | -0.19 | 18.9 | 20.05 | 47 | -- | -- |
| 65.2 | 0.376 | 8.01 | 0.846 | -- | -0.601 | -- | 0.657 | -0.181 | -- | 20.05 | 47 | -- | -- |
| 62.83 | 0.372 | 8.04 | 0.762 | 0.673 | -- | -0.34 | -- | -0.219 | 21.3 | -- | -- | -- | -- |
| 63.24 | 0.372 | 8.04 | 0.774 | 0.674 | -- | -- | -- | -0.219 | 21.2 | -- | -- | -- | -- |
| 66.94 | 0.381 | 8.02 | 0.833 | -- | -0.587 | -- | -- | -0.199 | -- | 20.04 | 44 | -- | -- |
| 71.19 | 0.395 | 8.06 | -- | 0.448 | -0.487 | -- | -- | -0.336 | 18 | 9.18 | 56 | -- | -- |
| 89.67 | 0.442 | 8.02 | 0.777 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 79.04 | 0.416 | 8.06 | -- | 0.675 | -- | -- | -- | -0.305 | 21.3 | -- | -- | -- | -- |
| 81.61 | 0.422 | 8.05 | -- | -- | -0.48 | -- | -- | -0.345 | -- | 9.18 | 56 | -- | -- |
| 105.59 | 0.48 | 8.04 | -- | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.69 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 10 |
| 3 | 49.72 | humidity | 80 | 10 | < th | dose independent | rect. | 3 | 13 |
| 5 | 49.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 8 | 49.82 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 17 |
| 12 | 49.91 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 22 | 50.04 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 29 | 50.08 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 34 | 50.23 | humidity | 70 | 30 | > th | dose dependent | sin | 1 | NA |
| 36 | 50.33 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 39 | 50.35 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 56 | 50.42 | humidity | 80 | 30 | > th | dose independent | sin | 1 | NA |
| 73 | 50.55 | humidity | 80 | 10 | < th | dose independent | sin | 1 | NA |
| 90 | 50.78 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 109 | 50.92 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |
| 111 | 50.95 | humidity | 90 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 130 | 51.17 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 131 | 51.17 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 13 |
| 133 | 51.18 | humidity | 80 | 90 | > th | dose independent | rect. | 4 | 13 |
| 141 | 51.23 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 235 | 51.66 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 11 |
| 338 | 52.13 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 346 | 52.15 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 20 |
| 374 | 52.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 408 | 52.30 | radiation | 20 | 30 | > th | dose independent | no | NA | NA |
| 517 | 52.32 | radiation | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 565 | 52.39 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 575 | 52.42 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 587 | 52.43 | radiation | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 637 | 52.59 | radiation | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 652 | 52.62 | humidity | 70 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 707 | 52.73 | radiation | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 725 | 52.78 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 20 |
| 731 | 52.79 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 733 | 52.80 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 736 | 52.81 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 752 | 52.82 | humidity | 70 | 90 | > th | dose dependent | rect. | 21 | 21 |
| 753 | 52.82 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 762 | 52.86 | radiation | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 763 | 52.87 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 764 | 52.88 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 13 |
| 791 | 52.92 | humidity | 80 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 808 | 52.93 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 817 | 52.96 | humidity | 80 | 10 | > th | dose dependent | rect. | 10 | 8 |
| 857 | 53.03 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 858 | 53.04 | humidity | 80 | 90 | < th | dose independent | rect. | 18 | 22 |
| 884 | 53.11 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 892 | 53.12 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 18 |