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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0582800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0506) R2 : 0.228
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.32 (0.251) R2dE : 0.148 R2E : 0.168
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.54 (0.108) R2dN8 : 0.0594 R2N8 : 0.0803
σ : 0.947
deviance : 413.77
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.0007636
memory length : 1603
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
395.6 0.934 5.8 -0.595 0.645 0.167 -0.915 7.82 0.559 14.6 0.2326 1471 -- --
436.29 0.973 5.62 0.225 0.602 0.771 -1.54 -- 0.761 14.7 9.951 4297 -- --
394.3 0.925 5.78 -0.536 0.633 -0.0768 -- 7.77 0.571 14.9 0.2306 1531 -- --
421.67 0.956 5.62 0.048 0.676 1.13 -- -- 0.97 14.9 9.93 13039 -- --
404.39 0.937 5.78 -0.309 -- -1.43 -- 5.31 0.545 -- 0.24 1641 -- --
446.64 0.991 5.64 0.544 0.674 -- -1.48 -- 0.852 14.2 -- -- -- --
454.21 0.998 5.65 0.503 0.688 -- -- -- 0.845 14.8 -- -- -- --
414.28 0.948 5.76 -0.1 -- -2.39 -- -- 0.529 -- 0.04998 1599 -- --
415.1 0.949 5.62 -- 0.716 1.14 -- -- 0.978 14.9 9.77 24732 -- --
481.64 1.03 5.65 0.474 -- -- -- -- 0.827 -- -- -- -- --
460.88 1 5.66 -- 0.678 -- -- -- 0.789 14.8 -- -- -- --
413.77 0.947 5.76 -- -- -2.32 -- -- 0.54 -- 0.0007636 1603 -- --
487.56 1.03 5.66 -- -- -- -- -- 0.775 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.84 wind 1.0 43200 > th dose independent rect. 10 1
2 379.06 wind 1.0 43200 < th dose independent rect. 10 1
4 382.23 wind 1.0 43200 < th dose dependent rect. 10 1
5 383.34 wind 1.0 43200 > th dose independent rect. 9 3
8 385.61 humidity 90.0 14400 < th dose dependent rect. 3 1
9 386.08 wind 1.0 43200 < th dose dependent rect. 10 15
12 386.85 wind 9.0 14400 > th dose dependent rect. 13 1
16 388.53 wind 1.0 43200 < th dose dependent rect. 6 1
19 389.41 radiation 10.0 14400 > th dose independent rect. 6 1
33 390.15 wind 1.0 43200 < th dose independent rect. 13 12
35 390.43 wind 1.0 43200 > th dose independent rect. 14 11
36 390.77 wind 1.0 43200 < th dose dependent sin 18 NA
38 391.18 humidity 80.0 14400 < th dose independent rect. 23 1
43 391.45 radiation 20.0 43200 < th dose dependent rect. 10 1
44 391.52 wind 1.0 43200 < th dose dependent rect. 4 4
50 391.76 atmosphere 995.0 43200 < th dose dependent rect. 2 13
53 392.19 wind 1.0 43200 < th dose independent rect. 11 14
54 392.20 radiation 10.0 43200 > th dose independent rect. 7 4
55 392.22 wind 1.0 43200 > th dose independent rect. 11 14
56 392.27 wind 9.0 14400 < th dose independent rect. 13 1
59 392.35 atmosphere 995.0 43200 < th dose independent rect. 4 10
61 392.40 wind 3.0 14400 > th dose dependent rect. 15 1
64 392.46 atmosphere 995.0 43200 > th dose independent rect. 4 10
83 392.62 atmosphere 995.0 43200 < th dose dependent sin 4 NA
85 392.66 wind 5.0 14400 < th dose independent rect. 15 2
86 392.74 atmosphere 995.0 43200 > th dose independent rect. 5 7
87 392.77 atmosphere 995.0 43200 < th dose independent rect. 5 6
93 393.03 atmosphere 995.0 43200 < th dose dependent rect. 3 8
95 393.06 humidity 80.0 14400 > th dose independent rect. 3 1
98 393.10 radiation 1.0 43200 < th dose dependent rect. 20 9
99 393.12 wind 3.0 43200 < th dose dependent rect. 20 1
110 393.34 radiation 1.0 43200 < th dose dependent rect. 3 2
111 393.35 radiation 1.0 43200 < th dose dependent rect. 24 5
119 393.47 wind 9.0 14400 < th dose dependent rect. 14 2
123 393.55 atmosphere 995.0 43200 < th dose dependent rect. 4 5
131 393.64 radiation 10.0 14400 > th dose dependent rect. 6 1
134 393.69 atmosphere 995.0 43200 < th dose dependent rect. 5 3
135 393.72 wind 5.0 14400 > th dose independent rect. 14 3
175 393.95 temperature 20.0 10 > th dose dependent rect. 5 19
182 394.08 wind 7.0 43200 < th dose dependent rect. 16 1
183 394.12 radiation 20.0 43200 > th dose independent rect. 10 1
187 394.20 humidity 80.0 43200 > th dose independent rect. 20 1
199 394.40 wind 1.0 14400 > th dose dependent rect. 11 5
205 394.62 atmosphere 1005.0 43200 < th dose independent rect. 10 1
208 394.67 wind 5.0 14400 < th dose dependent rect. 11 5
214 394.72 wind 9.0 14400 < th dose dependent rect. 11 5
221 394.80 precipitation 0.1 43200 > th dose independent rect. 13 6
222 394.81 wind 1.0 43200 < th dose independent rect. 4 4
225 394.86 radiation 10.0 43200 > th dose independent sin 7 NA
228 394.88 wind 1.0 43200 < th dose independent rect. 21 1
230 394.89 wind 9.0 43200 > th dose dependent rect. 18 1
235 394.94 atmosphere 995.0 43200 > th dose independent rect. 6 3
256 395.01 temperature 20.0 10 > th dose dependent rect. 5 15
263 395.06 precipitation 0.1 43200 < th dose independent rect. 13 6
265 395.06 precipitation 0.1 43200 < th dose dependent rect. 13 6
273 395.12 precipitation 0.1 43200 > th dose dependent rect. 13 2
284 395.22 precipitation 0.1 43200 > th dose dependent rect. 13 4
286 395.24 precipitation 0.1 43200 < th dose independent rect. 12 8
287 395.24 precipitation 0.1 43200 < th dose dependent rect. 12 8
291 395.26 wind 1.0 43200 < th dose independent rect. 2 6
293 395.27 temperature 20.0 90 > th dose dependent rect. 5 15
311 395.42 precipitation 0.1 43200 > th dose independent rect. 18 2
328 395.48 wind 1.0 43200 > th dose independent rect. 21 1
341 395.60 wind 1.0 43200 > th dose independent rect. 8 17
352 395.68 temperature 20.0 10 > th dose dependent rect. 5 21
354 395.73 humidity 70.0 43200 > th dose independent rect. 9 6
357 395.74 humidity 70.0 43200 < th dose independent rect. 10 5
386 395.92 wind 5.0 43200 < th dose dependent rect. 15 6
393 395.98 wind 3.0 14400 < th dose independent rect. 10 5
394 395.98 temperature 20.0 10 > th dose dependent rect. 9 11
407 396.05 precipitation 0.1 43200 < th dose independent rect. 18 2
408 396.05 precipitation 0.1 43200 < th dose dependent rect. 18 2
416 396.13 radiation 20.0 43200 > th dose independent rect. 13 1
420 396.14 temperature 20.0 10 > th dose dependent rect. 7 13
428 396.18 wind 9.0 14400 > th dose independent rect. 13 1
445 396.28 radiation 20.0 43200 > th dose independent rect. 10 4
470 396.39 wind 1.0 43200 > th dose independent rect. 4 4
474 396.41 humidity 70.0 43200 > th dose independent rect. 10 1
525 396.67 humidity 70.0 43200 > th dose independent rect. 1 16
535 396.72 humidity 70.0 43200 > th dose independent rect. 2 14
547 396.80 wind 1.0 43200 < th dose dependent rect. 2 6
548 396.82 radiation 40.0 43200 > th dose independent rect. 7 1
564 396.82 radiation 40.0 43200 > th dose dependent rect. 7 1
583 396.83 wind 1.0 14400 < th dose dependent rect. 18 7
586 396.87 temperature 10.0 30 > th dose dependent rect. 3 23
599 396.98 wind 1.0 43200 > th dose independent rect. 2 6
611 397.02 humidity 50.0 43200 > th dose dependent rect. 9 20
624 397.08 radiation 1.0 14400 > th dose independent rect. 18 1
650 397.15 humidity 70.0 43200 < th dose independent rect. 1 15
661 397.20 wind 3.0 43200 > th dose independent rect. 13 8
666 397.23 wind 1.0 43200 > th dose independent rect. 19 1
696 397.34 precipitation 0.1 43200 > th dose dependent rect. 11 8
720 397.44 humidity 70.0 43200 > th dose independent rect. 9 19
741 397.52 wind 1.0 14400 < th dose dependent rect. 22 3
753 397.56 wind 1.0 43200 < th dose independent sin 17 NA
764 397.58 humidity 70.0 43200 > th dose independent rect. 9 17
790 397.65 radiation 1.0 14400 < th dose independent rect. 18 5
791 397.65 radiation 1.0 14400 < th dose independent rect. 18 10
795 397.66 humidity 70.0 43200 > th dose dependent rect. 20 1
819 397.68 atmosphere 995.0 43200 < th dose dependent no NA NA
822 397.68 atmosphere 995.0 43200 < th dose dependent rect. 7 23
825 397.69 radiation 1.0 14400 < th dose independent rect. 18 8
838 397.72 radiation 1.0 14400 < th dose independent rect. 18 1
858 397.79 humidity 60.0 43200 > th dose dependent rect. 19 3
881 397.86 humidity 70.0 43200 < th dose independent rect. 10 1
887 397.88 humidity 70.0 43200 < th dose independent rect. 9 21
976 398.13 radiation 20.0 43200 < th dose dependent rect. 13 1
980 398.15 wind 1.0 43200 > th dose independent sin 17 NA
981 398.15 humidity 70.0 43200 > th dose independent sin 2 NA