BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0582800 Os02g0582800|AK108180
         (176 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0582800  Conserved hypothetical protein                      211   3e-55
Os04g0468600  Heavy metal transport/detoxification protein d...   101   2e-22
Os02g0582600  Heavy metal transport/detoxification protein d...    87   8e-18
Os04g0468000                                                       84   7e-17
Os04g0467900                                                       83   9e-17
Os02g0584600                                                       67   8e-12

>Os02g0582800 Conserved hypothetical protein
          Length = 176

 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 120/176 (68%)

Query: 1   MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL 60
           MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL
Sbjct: 1   MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL 60

Query: 61  RRKVGHADIVELRTLHDTYPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRKVGHADIVELRTLHDTYPR                                       
Sbjct: 61  RRKVGHADIVELRTLHDTYPRGAAAGSYAATSTSGRLGSSNGGYYYSSQLSAGRGGAYSS 120

Query: 121 XXHQLYGGGYDSPYYHQAPQHXXXXXXXXXXXXXXXVQHEYYTTSSNDDPNGCSIM 176
             HQLYGGGYDSPYYHQAPQH               VQHEYYTTSSNDDPNGCSIM
Sbjct: 121 GGHQLYGGGYDSPYYHQAPQHPYDGGYYPSPYGAAAVQHEYYTTSSNDDPNGCSIM 176



>Os04g0468600 Heavy metal transport/detoxification protein domain containing
          protein
          Length = 191

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 65/75 (86%), Gaps = 2/75 (2%)

Query: 1  MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL 60
          MR E++IR+Q SSEK G+ KA+KVAAA+ GVESVTLAGE +NLL V+G GVDSN LT +L
Sbjct: 1  MRKEIVIRLQ-SSEK-GHKKAIKVAAAVSGVESVTLAGEDKNLLLVIGFGVDSNDLTEKL 58

Query: 61 RRKVGHADIVELRTL 75
          RRKVGHA++VELRT+
Sbjct: 59 RRKVGHAEVVELRTV 73



>Os02g0582600 Heavy metal transport/detoxification protein domain containing
          protein
          Length = 246

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 1  MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRL 60
          M+ E++IR+   ++K    KAMK AA + GV+SVTLAG  RNLL V+G GVD+N LT +L
Sbjct: 1  MKKEIIIRISVKTDK-CQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKL 59

Query: 61 RRKVGHADIVELRTLHDTY 79
          +RKVG  +IVELRT+ DT+
Sbjct: 60 KRKVGSGEIVELRTV-DTF 77



>Os04g0468000 
          Length = 239

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 2/79 (2%)

Query: 1   MRTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSG-VDSNHLTSR 59
           MRTE+LI +Q SSE+   +KA+KVA+ ++GV+SVT+AGE RNLL V+G G VD++ LT R
Sbjct: 24  MRTEILIWIQLSSERC-RSKALKVASTVNGVQSVTVAGEERNLLLVIGDGVVDASRLTRR 82

Query: 60  LRRKVGHADIVELRTLHDT 78
           LR  VG+A+IVEL T   T
Sbjct: 83  LRNHVGYAEIVELTTSSST 101



>Os04g0467900 
          Length = 229

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 4  EMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRLRRK 63
          E++IRM+  S+K  + KA+KVAAA+ GVESVT+AG  R+LL V+G GVD + LT +LRR+
Sbjct: 3  EIIIRMRPDSDKC-HHKALKVAAAVSGVESVTVAGRDRDLLLVIGDGVDESKLTKKLRRE 61

Query: 64 VGHADIVELRTL 75
          VG A+I+ELRTL
Sbjct: 62 VGEAEILELRTL 73



>Os02g0584600 
          Length = 119

 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 2  RTEMLIRMQASSEKNGNAKAMKVAAAMDGVESVTLAGEGRNLLRVVGSGVDSNHLTSRLR 61
          + +++I+M  +S+K   +KAM + A+  GV+SV LAG+G++ L VVG GVDS  LT+ LR
Sbjct: 3  KQKIVIKMNMASDKC-RSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTALR 61

Query: 62 RKVGHADIVEL 72
          +KVGHA ++ +
Sbjct: 62 KKVGHATLMTV 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,229,138
Number of extensions: 121769
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 8
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)