BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0558600 Os02g0558600|AK063457
         (593 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0558600  Conserved hypothetical protein                     1140   0.0  
Os01g0885300  Conserved hypothetical protein                      104   2e-22
Os05g0420500  Conserved hypothetical protein                      100   6e-21

>Os02g0558600 Conserved hypothetical protein
          Length = 593

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/593 (93%), Positives = 553/593 (93%)

Query: 1   MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60
           MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD
Sbjct: 1   MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60

Query: 61  HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKAQEEVNQTEATSEEGTDHYDANGHN 120
           HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKAQEEVNQTEATSEEGTDHYDANGHN
Sbjct: 61  HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKAQEEVNQTEATSEEGTDHYDANGHN 120

Query: 121 IHEHKLPAVSSEDPVASAPSSSFEPSTGVSSSGEKKCQDPHGLGYLTFNPLFSQITGSQN 180
           IHEHKLPAVSSEDPVASAPSSSFEPSTGVSSSGEKKCQDPHGLGYLTFNPLFSQITGSQN
Sbjct: 121 IHEHKLPAVSSEDPVASAPSSSFEPSTGVSSSGEKKCQDPHGLGYLTFNPLFSQITGSQN 180

Query: 181 IQLEGPVSDQMHHAEGDFPCATHTNTRDVLNHEPLERKVLAPKHIVSNDNGENVAVSRIA 240
           IQLEGPVSDQMHHAEGDFPCATHTNTRDVLNHEPLERKVLAPKHIVSNDNGENVAVSRIA
Sbjct: 181 IQLEGPVSDQMHHAEGDFPCATHTNTRDVLNHEPLERKVLAPKHIVSNDNGENVAVSRIA 240

Query: 241 LPIASLQREHLKIDLERQEPRKNALISSMPTKSSKEPSTSVIHIPRIDSIRNSENRNSLE 300
           LPIASLQREHLKIDLERQEPRKNALISSMPTKSSKEPSTSVIHIPRIDSIRNSENRNSLE
Sbjct: 241 LPIASLQREHLKIDLERQEPRKNALISSMPTKSSKEPSTSVIHIPRIDSIRNSENRNSLE 300

Query: 301 LKDPFHKRVEMKLRALSDRMNADKATASSRSVFHQHAERAVXXXXXXXXXXXXXXYQNGD 360
           LKDPFHKRVEMKLRALSDRMNADKATASSRSVFHQHAERAV              YQNGD
Sbjct: 301 LKDPFHKRVEMKLRALSDRMNADKATASSRSVFHQHAERAVTSSRSSMTSCRSSTYQNGD 360

Query: 361 RVATSSRSALGQNADRVHXXXXXXXXXXXXXLREPHGAVSLPRAAVNKGSHVSHVALSNS 420
           RVATSSRSALGQNADRVH             LREPHGAVSLPRAAVNKGSHVSHVALSNS
Sbjct: 361 RVATSSRSALGQNADRVHASSKSAQQASRRSLREPHGAVSLPRAAVNKGSHVSHVALSNS 420

Query: 421 TTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVSSVNNRPQNKRKQLSTPSTWDE 480
           TTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVSSVNNRPQNKRKQLSTPSTWDE
Sbjct: 421 TTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVSSVNNRPQNKRKQLSTPSTWDE 480

Query: 481 NKLNRGYXXXXXXXXXXXXXVGILPYKTAKAPKISNGNNVVVKQTEMMQKSRNGSHPAGG 540
           NKLNRGY             VGILPYKTAKAPKISNGNNVVVKQTEMMQKSRNGSHPAGG
Sbjct: 481 NKLNRGYARTSAPSSARSSSVGILPYKTAKAPKISNGNNVVVKQTEMMQKSRNGSHPAGG 540

Query: 541 RNVQPKNVVSCNEQKRKVTPFQASSLSSSTRNNQASGPSMSKSKPRQERPRWR 593
           RNVQPKNVVSCNEQKRKVTPFQASSLSSSTRNNQASGPSMSKSKPRQERPRWR
Sbjct: 541 RNVQPKNVVSCNEQKRKVTPFQASSLSSSTRNNQASGPSMSKSKPRQERPRWR 593



>Os01g0885300 Conserved hypothetical protein
          Length = 573

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 1   MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60
           MAAEV Q F + WS  +    D       SV Q + DHGS+SFGRF  ESLSWEK SVF 
Sbjct: 2   MAAEVNQTFFA-WSQGEPTERD--GSQGVSVSQKI-DHGSISFGRFELESLSWEKWSVFS 57

Query: 61  HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKAQEEVNQTEATSEEGTDHYDAN 117
            ++R EE       GLVAQKKA+FEEYY++ R LKAQ++  QTE   E   D  D++
Sbjct: 58  DDKRHEEFGKFN--GLVAQKKAYFEEYYRKIRELKAQQQNQQTELILEYSGDGSDSS 112



>Os05g0420500 Conserved hypothetical protein
          Length = 711

 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 9/118 (7%)

Query: 1   MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60
           MA EV Q + + WS  + P  D    T       V DHGS+SFGRF  ESL+WEK SVF 
Sbjct: 1   MATEVTQNYFA-WSQEESPVQDSSQGTP-----QVFDHGSISFGRFELESLAWEKWSVFA 54

Query: 61  HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKA-QEEVNQTEATSEEGTDHYDAN 117
           ++RR EE       GLVA+KKA+FEEY+KR R LKA Q++  QTE   +   D  D++
Sbjct: 55  NDRRHEEFGKFN--GLVAKKKAYFEEYFKRIRELKALQQQNQQTELNLDYSGDGSDSS 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.124    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,329,147
Number of extensions: 722520
Number of successful extensions: 2010
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2005
Number of HSP's successfully gapped: 3
Length of query: 593
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 487
Effective length of database: 11,501,117
Effective search space: 5601043979
Effective search space used: 5601043979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)