BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0556600 Os02g0556600|AK066206
         (469 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0556600  Similar to Pherophorin-dz1 protein precursor        887   0.0  
Os03g0235100  Similar to Pg4                                       74   2e-13
Os01g0775600  Lissencephaly type-1-like homology motif domai...    65   1e-10

>Os02g0556600 Similar to Pherophorin-dz1 protein precursor
          Length = 469

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/445 (95%), Positives = 426/445 (95%)

Query: 25  DPMRLASRWRSXXXXXXXXXXXXXXXXXXXLNTTNSSGLFAVVSTDRMSVRYLGVNQHGH 84
           DPMRLASRWRS                   LNTTNSSGLFAVVSTDRMSVRYLGVNQHGH
Sbjct: 25  DPMRLASRWRSPAEWGAAAAEMEAEPAPSELNTTNSSGLFAVVSTDRMSVRYLGVNQHGH 84

Query: 85  DVGVVQANRPAPTRRAVYYFEMGVKNAGQKGQTSIGFTTENFKMRRQPGWESNSCGYHGD 144
           DVGVVQANRPAPTRRAVYYFEMGVKNAGQKGQTSIGFTTENFKMRRQPGWESNSCGYHGD
Sbjct: 85  DVGVVQANRPAPTRRAVYYFEMGVKNAGQKGQTSIGFTTENFKMRRQPGWESNSCGYHGD 144

Query: 145 DGYLYRGPGKSESFGPKFTSGDTIGAGINYFSQEFFFTKNGSLVGSFQKEIKGPLYPTIA 204
           DGYLYRGPGKSESFGPKFTSGDTIGAGINYFSQEFFFTKNGSLVGSFQKEIKGPLYPTIA
Sbjct: 145 DGYLYRGPGKSESFGPKFTSGDTIGAGINYFSQEFFFTKNGSLVGSFQKEIKGPLYPTIA 204

Query: 205 VHSQDEEVTVNFGKEPFCFDIEGYIFEEKMKQQSVSDKLDLQPDISHWIVRSYLLHYGYQ 264
           VHSQDEEVTVNFGKEPFCFDIEGYIFEEKMKQQSVSDKLDLQPDISHWIVRSYLLHYGYQ
Sbjct: 205 VHSQDEEVTVNFGKEPFCFDIEGYIFEEKMKQQSVSDKLDLQPDISHWIVRSYLLHYGYQ 264

Query: 265 DTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDSAFKKLGEWYPQV 324
           DTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDSAFKKLGEWYPQV
Sbjct: 265 DTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDSAFKKLGEWYPQV 324

Query: 325 IKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDGLLKESVALLAYE 384
           IKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDGLLKESVALLAYE
Sbjct: 325 IKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDGLLKESVALLAYE 384

Query: 385 KPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEKLLRQLTVCSFERR 444
           KPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEKLLRQLTVCSFERR
Sbjct: 385 KPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEKLLRQLTVCSFERR 444

Query: 445 AFSGDQGDAFLLHKEVQSCDRSRCS 469
           AFSGDQGDAFLLHKEVQSCDRSRCS
Sbjct: 445 AFSGDQGDAFLLHKEVQSCDRSRCS 469



>Os03g0235100 Similar to Pg4
          Length = 246

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 14/182 (7%)

Query: 253 IVRSYLLHYGYQDTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDS 312
           +V ++L+  G+ D  + F + S T P  +          +  ++ R  +++ + SG++  
Sbjct: 50  LVMNFLVTEGFVDAADKFRVESGTQPDID----------LATITDRMEVKRAVQSGNVQE 99

Query: 313 AFKKLGEWYPQVIKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLA-NFLTHKAFD 371
           A +K+ +  P ++ D    + F L  Q+ IE I AG++ +A+++A+  LA     ++ F 
Sbjct: 100 AIEKINDLNPTIL-DTNPQLYFHLQQQKLIELIRAGKINEALEFAQEELAPRGEENQVFL 158

Query: 372 GLLKESVALLAYEKPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEK 431
             ++++VALL +E       G LLD  QR   A  VNAA+L++  + KDP+  L S L+ 
Sbjct: 159 EEIEKTVALLVFEDIKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPK--LPSLLKM 216

Query: 432 LL 433
           L+
Sbjct: 217 LI 218



>Os01g0775600 Lissencephaly type-1-like homology motif domain containing protein
          Length = 216

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 253 IVRSYLLHYGYQDTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDS 312
           IV SYL+H  +++T  +F  ++  + P ++            +  RK +   ++ G+   
Sbjct: 22  IVLSYLMHNCFKETAETFLSSTGLELPVDYT---------VDVDKRKAIFSFVLEGNALK 72

Query: 313 AFKKLGEWYPQVIKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDG 372
           A     E  P +++++  +  F L S  FIE + + +  +A+++ +  L  F     +  
Sbjct: 73  AIDLTEELAPNLLENDMDL-HFDLLSLHFIELVRSRKCTEALEFGQKKLTPFGKVPKYVE 131

Query: 373 LLKESVALLAYEKPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEKL 432
            L++ +ALLAYE+P +S + +LL    R+ VAD++N AVL+   +   P    YS LE++
Sbjct: 132 KLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLA---HANRPA---YSSLERV 185

Query: 433 LRQLTVC 439
           ++Q TV 
Sbjct: 186 IQQATVV 192



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,247,690
Number of extensions: 651256
Number of successful extensions: 1250
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 3
Length of query: 469
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 365
Effective length of database: 11,605,545
Effective search space: 4236023925
Effective search space used: 4236023925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)