BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0551900 Os02g0551900|AK103760
(343 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0551900 Zinc finger, C2H2-type domain containing protein 598 e-171
Os05g0106000 Zinc finger, C2H2-type domain containing protein 300 2e-81
AK110195 84 2e-16
Os01g0907400 Transcription factor jumonji, JmjN domain cont... 67 2e-11
Os02g0116000 Zinc finger, C2H2-type domain containing protein 65 9e-11
>Os02g0551900 Zinc finger, C2H2-type domain containing protein
Length = 343
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/333 (87%), Positives = 291/333 (87%)
Query: 1 MMQTAGRRRHRWVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTT 60
MMQTAGRRRHRWVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTT
Sbjct: 1 MMQTAGRRRHRWVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTT 60
Query: 61 EVLFLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGE 120
EVLFLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGE
Sbjct: 61 EVLFLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGE 120
Query: 121 KNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEK 180
KNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEK
Sbjct: 121 KNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEK 180
Query: 181 GGLQNPGGSATNRSGLADHSHNSHXXXXXXXXXXXXXDRPYVCPYDGCAKAYIHEYKLNL 240
GGLQNPGGSATNRSGLADHSHNSH DRPYVCPYDGCAKAYIHEYKLNL
Sbjct: 181 GGLQNPGGSATNRSGLADHSHNSHTPKPSAAPPTPSADRPYVCPYDGCAKAYIHEYKLNL 240
Query: 241 HLKKEHPNHYQDAGAQAAXXXXXXXXXXXXLTAKMPLPKVPKRRGYTEPYQPPVSVVEEH 300
HLKKEHPNHYQDAGAQAA LTAKMPLPKVPKRRGYTEPYQPPVSVVEEH
Sbjct: 241 HLKKEHPNHYQDAGAQAASSKMSKRRSKPSLTAKMPLPKVPKRRGYTEPYQPPVSVVEEH 300
Query: 301 QWPRNVLYXXXXXXXXXXXXXXXXXARYRAASS 333
QWPRNVLY ARYRAASS
Sbjct: 301 QWPRNVLYEDDSEETEEEGDNVGDGARYRAASS 333
>Os05g0106000 Zinc finger, C2H2-type domain containing protein
Length = 401
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 172/265 (64%), Gaps = 19/265 (7%)
Query: 12 WVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTTEVLFLCSYEGC 71
WVK W+PQDL + G CALYKWVRED LK E E KPEPTTE+LFLCSYE C
Sbjct: 35 WVKHWIPQDLATSSGKCALYKWVREDVYKNLKDGKAVPEPEAVKPEPTTEILFLCSYENC 94
Query: 72 GKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCG 131
GKTFVD ALRKHAHVH ERQY+C GC KKF+DSSKLKRH LIHTG+K+F+CPH GCG
Sbjct: 95 GKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCG 154
Query: 132 KAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEKGGL-------- 183
KAFSLDFNL++H+KTH+++NYHVC +P C +RFT +SKL++H+K HEK G
Sbjct: 155 KAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVK-GHEKTGTPITAQYVP 213
Query: 184 --QNPGGSATNRSGLADHSHNSHXXXX--------XXXXXXXXXDRPYVCPYDGCAKAYI 233
P S+ + +RPYVCPYDGC KAYI
Sbjct: 214 SSDKPQSSSKPATPATTKPTTPAATKTTTPASTKPTTPAPTSFAERPYVCPYDGCGKAYI 273
Query: 234 HEYKLNLHLKKEHPNHYQDAGAQAA 258
H YKLNLHLK +HP H Q+ + A
Sbjct: 274 HSYKLNLHLKTQHPEHGQEENGRIA 298
>AK110195
Length = 976
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 69 EGCGKTFVDAGALRKHAHVH-GERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPH 127
E CGK+F L +H +H GER Y C Y GC K F+ S L H +H+GE+ C
Sbjct: 563 ETCGKSFSRRSDLARHRRIHTGERPYPCDYPGCGKSFIQRSALTVHSRVHSGERPHKCEF 622
Query: 128 EGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIK 175
EGC K+FS +L H +TH+ +VC +P+C + FT+ + L H +
Sbjct: 623 EGCDKSFSDSSSLARHRRTHTGRRPYVCDFPKCGKMFTRRTTLNRHSR 670
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 59 TTEVLFLCSYEGCGKTFVDAGALRKHAHVH-GERQYVCHYAGCDKKFLDSSKLKRHFLIH 117
T E + C Y GCGK+F+ AL H+ VH GER + C + GCDK F DSS L RH H
Sbjct: 583 TGERPYPCDYPGCGKSFIQRSALTVHSRVHSGERPHKCEFEGCDKSFSDSSSLARHRRTH 642
Query: 118 TGEKNFVCPHEGCGKAFSLDFNLKAHMKTH 147
TG + +VC CGK F+ L H + H
Sbjct: 643 TGRRPYVCDFPKCGKMFTRRTTLNRHSRCH 672
>Os01g0907400 Transcription factor jumonji, JmjN domain containing protein
Length = 1286
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 46 DKEQEAELAKPEPTTE-VLFLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKF 104
+ E + ++ P+P + V + C EGC +F L H + +C GC KKF
Sbjct: 1148 EAEAKKQIRTPKPPKQAVEYSCDIEGCSMSFRTKRDLSLH------KSDICPVKGCGKKF 1201
Query: 105 LDSSKLKRHFLIHTGEKNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRF 164
L +H +HT ++ CP +GC AF + H++ H+ D +VC P CA+ F
Sbjct: 1202 FSHKYLLQHRKVHTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYVCHEPGCAQTF 1261
Query: 165 TQESKLRAH 173
S H
Sbjct: 1262 RFVSDFSRH 1270
>Os02g0116000 Zinc finger, C2H2-type domain containing protein
Length = 284
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 85/221 (38%), Gaps = 52/221 (23%)
Query: 64 FLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFL-IHTGE-- 120
F+C E C +++ L +H H + + C GC +KF + ++RH IH E
Sbjct: 3 FICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDETA 62
Query: 121 ----KNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYH--VCKYPECARRFTQESKLRAHI 174
+ FVC EGC K F +K H ++H +Y VC P C + FT LRAH
Sbjct: 63 TKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHN 122
Query: 175 KQQHE--------------------------------KGGLQNPGGSATNRSGLADHSHN 202
+ H+ K + S +N+S L H
Sbjct: 123 QACHQYVQCDICGEKHLKKNIKRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHIKA 182
Query: 203 SHXXXXXXXXXXXXXDRPYVCPYDGCAKAYIHEYKLNLHLK 243
SH +P+ C + GC K + +++ + H K
Sbjct: 183 SHDQV-----------KPFACRFTGCEKVFPYKHVRDNHEK 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,383,040
Number of extensions: 459230
Number of successful extensions: 1163
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 9
Length of query: 343
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 241
Effective length of database: 11,709,973
Effective search space: 2822103493
Effective search space used: 2822103493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)