FiT-DB / Search/ Help/ Sample detail

Os02g0551900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0121) R2 : 0.111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.192 (0.0254) R2dN8 : 0.143 R2N8 : 0.111
σ : 0.227
deviance : 23.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.02 0.182 12.2 -0.165 0.354 -0.434 0.417 -0.206 0.114 5.22 24.1 15 -- --
15.09 0.181 12.2 -0.191 0.352 -0.414 0.386 -- 0.109 5.29 24.1 16 -- --
15.43 0.183 12.2 -0.182 0.357 -0.427 -- -0.0853 0.108 5.21 24.1 15 -- --
15.44 0.183 12.2 -0.189 0.354 -0.413 -- -- 0.108 5.21 24.1 13 -- --
21.86 0.219 12.2 -0.154 -- -0.333 -- -0.0229 0.134 -- 23.6 13 -- --
17.49 0.196 12.2 -0.1 0.328 -- 0.394 -- 0.176 5.96 -- -- -- --
17.87 0.198 12.2 -0.0969 0.33 -- -- -- 0.174 5.94 -- -- -- --
21.86 0.218 12.2 -0.157 -- -0.333 -- -- 0.134 -- 23.6 13 -- --
16.32 0.188 12.2 -- 0.347 -0.344 -- -- 0.139 5.36 24.1 15 -- --
23.51 0.227 12.2 -0.0871 -- -- -- -- 0.182 -- -- -- -- --
18.12 0.199 12.2 -- 0.328 -- -- -- 0.185 5.96 -- -- -- --
22.46 0.221 12.2 -- -- -0.283 -- -- 0.159 -- 23.4 5 -- --
23.71 0.227 12.2 -- -- -- -- -- 0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.88 temperature 25 10 < th dose dependent rect. 22 17
3 14.89 temperature 25 10 < th dose dependent rect. 11 19
12 14.92 temperature 25 10 < th dose dependent rect. 17 22
30 14.96 temperature 25 10 < th dose dependent rect. 20 19
66 15.03 temperature 25 10 < th dose dependent rect. 22 22
95 15.08 temperature 25 10 < th dose dependent rect. 5 23
99 15.09 radiation 10 14400 > th dose independent rect. 5 1
118 15.10 temperature 15 720 > th dose dependent rect. 18 5
130 15.10 temperature 25 10 < th dose dependent rect. 19 23
131 15.11 temperature 25 10 < th dose dependent no NA NA
153 15.13 temperature 25 10 < th dose dependent rect. 3 23
165 15.14 temperature 25 10 < th dose dependent rect. 13 23
209 15.19 temperature 25 10 < th dose dependent rect. 1 23
263 15.27 radiation 40 14400 > th dose dependent rect. 15 18
266 15.28 temperature 25 720 > th dose dependent rect. 18 1
268 15.28 radiation 30 14400 < th dose dependent rect. 18 11
283 15.30 radiation 30 14400 > th dose independent rect. 16 16
285 15.30 temperature 30 720 < th dose dependent rect. 16 11
294 15.31 radiation 40 14400 > th dose dependent rect. 8 1
295 15.31 temperature 30 1440 < th dose dependent rect. 7 3
296 15.31 radiation 40 14400 < th dose dependent rect. 18 3
303 15.32 temperature 15 1440 > th dose dependent rect. 7 1
304 15.32 temperature 30 1440 < th dose dependent rect. 7 1
305 15.32 temperature 30 1440 < th dose dependent rect. 9 1
308 15.32 radiation 20 14400 < th dose dependent rect. 18 3
310 15.32 temperature 10 1440 > th dose dependent rect. 6 4
329 15.33 radiation 30 14400 < th dose independent rect. 16 5
330 15.33 radiation 30 14400 < th dose independent rect. 16 13
331 15.33 temperature 25 10 < th dose dependent sin 9 NA
351 15.34 radiation 30 14400 < th dose independent rect. 16 9
355 15.34 temperature 10 1440 > th dose dependent rect. 9 1
357 15.34 radiation 10 14400 < th dose dependent rect. 18 1
373 15.34 radiation 30 14400 < th dose dependent rect. 18 7
384 15.35 radiation 30 14400 < th dose independent rect. 16 3
393 15.35 radiation 10 14400 < th dose dependent rect. 18 7
399 15.36 radiation 30 14400 < th dose independent rect. 16 1
416 15.36 temperature 25 10 < th dose dependent rect. 22 8
434 15.37 wind 7 43200 > th dose independent rect. 10 1
475 15.38 radiation 1 720 > th dose dependent rect. 18 11
483 15.39 wind 7 43200 < th dose independent rect. 10 1
485 15.39 temperature 20 10 < th dose independent rect. 22 16
529 15.41 radiation 1 14400 < th dose dependent rect. 4 1
536 15.41 atmosphere 1005 30 > th dose dependent rect. 23 13
542 15.42 humidity 90 14400 < th dose independent rect. 22 3
557 15.43 radiation 30 14400 < th dose independent rect. 15 17
573 15.43 radiation 1 14400 < th dose dependent rect. 18 13
581 15.44 radiation 30 14400 > th dose independent rect. 7 1
585 15.44 humidity 90 14400 < th dose independent rect. 21 5
600 15.44 temperature 20 720 > th dose dependent rect. 20 1
607 15.44 radiation 10 1440 < th dose dependent rect. 18 11
610 15.44 atmosphere 1005 30 > th dose dependent rect. 23 16
611 15.44 radiation 1 14400 < th dose dependent rect. 18 17
618 15.45 temperature 25 720 > th dose independent rect. 18 3
627 15.45 temperature 30 720 < th dose dependent sin 14 NA
629 15.45 radiation 20 4320 < th dose dependent rect. 5 1
635 15.45 radiation 20 4320 < th dose dependent rect. 24 6
641 15.45 radiation 20 4320 < th dose dependent rect. 20 10
642 15.45 temperature 25 10 < th dose dependent rect. 17 13
643 15.45 radiation 1 14400 < th dose dependent rect. 18 15
653 15.46 wind 7 43200 > th dose independent rect. 5 6
661 15.46 temperature 15 10 > th dose dependent sin 11 NA
688 15.46 temperature 10 720 > th dose dependent rect. 11 19
693 15.46 humidity 50 1440 < th dose dependent rect. 16 21
700 15.47 radiation 40 4320 < th dose independent rect. 24 9
702 15.47 temperature 15 720 > th dose dependent sin 15 NA
703 15.47 radiation 1 720 > th dose dependent rect. 18 1
711 15.47 temperature 20 720 > th dose dependent rect. 20 3
713 15.47 temperature 30 720 < th dose dependent rect. 17 3
741 15.47 temperature 30 10 < th dose dependent rect. 17 11
744 15.47 temperature 25 720 > th dose dependent rect. 18 14
748 15.47 radiation 20 14400 > th dose dependent rect. 16 15
758 15.47 atmosphere 1005 30 > th dose dependent rect. 23 19
763 15.48 radiation 40 4320 < th dose independent rect. 8 1
765 15.48 radiation 40 4320 < th dose independent rect. 6 3
770 15.48 radiation 40 4320 < th dose independent rect. 20 13
771 15.48 temperature 20 10 > th dose independent rect. 3 23
810 15.48 temperature 10 1440 > th dose dependent rect. 5 18
824 15.49 radiation 40 4320 < th dose independent rect. 4 5
836 15.49 radiation 1 14400 < th dose independent rect. 18 13
852 15.49 temperature 30 720 < th dose dependent rect. 19 1
855 15.49 radiation 10 1440 < th dose dependent rect. 18 3
867 15.49 temperature 25 10 < th dose dependent rect. 20 10
872 15.49 temperature 10 720 > th dose dependent rect. 17 15
897 15.49 atmosphere 1005 30 > th dose dependent rect. 23 21
905 15.50 temperature 20 10 < th dose independent rect. 22 8
923 15.50 radiation 1 14400 < th dose dependent sin 10 NA
956 15.50 radiation 30 4320 < th dose dependent rect. 17 14
979 15.51 temperature 25 720 > th dose independent rect. 18 1
990 15.51 radiation 1 14400 < th dose independent rect. 18 11
999 15.51 radiation 1 14400 > th dose independent rect. 17 18