BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0551900 Os02g0551900|AK103760
(343 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G06634.1 | chr4:3764499-3766439 REVERSE LENGTH=388 291 3e-79
AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361 56 2e-08
AT5G04240.1 | chr5:1169544-1174638 FORWARD LENGTH=1341 55 7e-08
AT1G72050.2 | chr1:27115082-27117228 FORWARD LENGTH=413 50 2e-06
>AT4G06634.1 | chr4:3764499-3766439 REVERSE LENGTH=388
Length = 387
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/247 (57%), Positives = 174/247 (70%), Gaps = 6/247 (2%)
Query: 11 RWVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTTEVLFLCSYEG 70
+W+KEWVPQD+V GG C L+KWV ED S LK ++KE + +PEPTTE+LFLCSY+G
Sbjct: 26 KWIKEWVPQDIVATGGKCHLHKWVTEDTFSRLKEKEKEPDVPEPEPEPTTEILFLCSYDG 85
Query: 71 CGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGC 130
CGKTF D ALRKH+H+HGERQYVC GC KKFLDSSKLKRH+LIHTGE+N++C +EGC
Sbjct: 86 CGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGC 145
Query: 131 GKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEKGGLQNPGGSA 190
GKAFSLDFNL++HMKTHS +NYH+C Y C +R+ E KL+ H+ HEK G GG
Sbjct: 146 GKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNG----GGET 201
Query: 191 TNRSGLADHSHNSHXXXXXXXXXXXXXDRPYVCPYDGCAKAYIHEYKLNLHLKKEHPNHY 250
+ A+ + DRPY CPY+GC KAYIHEYKL LHLK+EHP H
Sbjct: 202 PKYTPPAEKVLRT--VKTPATVCGPSSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHL 259
Query: 251 QDAGAQA 257
Q+ A
Sbjct: 260 QEENADT 266
>AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361
Length = 1360
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 64 FLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNF 123
+ C+ EGC +F L H ++ +C GC K F L +H +H+ ++
Sbjct: 1243 YQCNMEGCTMSFSSEKQLMLH------KRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPL 1296
Query: 124 VCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAH 173
CP +GC F ++ H++ H+ +VC P+C + F S H
Sbjct: 1297 KCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRH 1346
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 65 LCSYEGCGKTFVDAGALRKHAHVHGE-RQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNF 123
+C +GCGK F L +H VH + R C + GC F + H +HTG + +
Sbjct: 1267 ICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPY 1326
Query: 124 VCPHEGCGKAFSL--DFNLKAHMKTHSV 149
VC CG+ F DF+ HSV
Sbjct: 1327 VCAEPDCGQTFRFVSDFSRHKRKTGHSV 1354
>AT5G04240.1 | chr5:1169544-1174638 FORWARD LENGTH=1341
Length = 1340
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 66 CSYEGCGKTFVDAGALRKHAHVH-GERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFV 124
C++EGCGK F L H VH ER + C + GC F H +HTGE+ ++
Sbjct: 1253 CTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYI 1312
Query: 125 CPHEGCGKAF 134
C +GCG +F
Sbjct: 1313 CKVDGCGLSF 1322
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 58 PTTEVLFLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIH 117
PTT C EGC TF L+ H ++ C + GC KKF L H +H
Sbjct: 1222 PTTTHPNRCYLEGCKMTFESKAKLQTH------KRNRCTHEGCGKKFRAHKYLVLHQRVH 1275
Query: 118 TGEKNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYHVCKYPECARRF 164
E+ F C +GC F + H++ H+ + ++CK C F
Sbjct: 1276 KDERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSF 1322
>AT1G72050.2 | chr1:27115082-27117228 FORWARD LENGTH=413
Length = 412
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 71 CGKTFVDAGALRKHAHVHG-ERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEG 129
CG F L++H H ER + C+ C + L RH L H G K F CP E
Sbjct: 71 CGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKG-KLFKCPKEN 129
Query: 130 CGKAFSLDFNLKAHMKT-HSVDN 151
C FS+ N+ H+K HS DN
Sbjct: 130 CKSEFSVQGNVGRHVKKYHSNDN 152
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,985,045
Number of extensions: 277989
Number of successful extensions: 703
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 9
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)