Os05g0106000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os05g0106000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.53 | 0.247 | 10.2 | -0.737 | 0.423 | 0.785 | -0.414 | 0.0371 | -0.176 | 16.4 | 21.5 | 3854 | -- | -- |
| 27.37 | 0.244 | 10.2 | -0.695 | 0.425 | 0.773 | -0.434 | -- | -0.162 | 16.6 | 21.45 | 2919 | -- | -- |
| 27.98 | 0.246 | 10.2 | -0.734 | 0.418 | 0.777 | -- | 0.0531 | -0.169 | 16.5 | 21.5 | 3897 | -- | -- |
| 27.82 | 0.246 | 10.2 | -0.702 | 0.419 | 0.766 | -- | -- | -0.162 | 16.8 | 21.4 | 2986 | -- | -- |
| 36.73 | 0.282 | 10.2 | -0.706 | -- | 0.766 | -- | 0.1 | -0.173 | -- | 21.5 | 3246 | -- | -- |
| 42.84 | 0.307 | 10.2 | -0.29 | 0.399 | -- | -0.342 | -- | 0.083 | 16.7 | -- | -- | -- | -- |
| 43.13 | 0.308 | 10.2 | -0.292 | 0.399 | -- | -- | -- | 0.0812 | 16.9 | -- | -- | -- | -- |
| 36.74 | 0.282 | 10.2 | -0.727 | -- | 0.753 | -- | -- | -0.175 | -- | 21.41 | 3246 | -- | -- |
| 35.4 | 0.277 | 10.2 | -- | 0.428 | 0.488 | -- | -- | -0.0528 | 16.4 | 22.68 | 2323 | -- | -- |
| 51.51 | 0.335 | 10.2 | -0.306 | -- | -- | -- | -- | 0.0709 | -- | -- | -- | -- | -- |
| 45.37 | 0.315 | 10.2 | -- | 0.404 | -- | -- | -- | 0.114 | 16.9 | -- | -- | -- | -- |
| 43.55 | 0.308 | 10.2 | -- | -- | 0.39 | -- | -- | 0.000905 | -- | 22.4 | 1860 | -- | -- |
| 53.98 | 0.343 | 10.2 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 7 | 26.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 115 | 26.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 124 | 26.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 160 | 27.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 177 | 27.07 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 195 | 27.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 196 | 27.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 274 | 27.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 351 | 27.35 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 372 | 27.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 373 | 27.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 508 | 27.56 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 522 | 27.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 536 | 27.59 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 546 | 27.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 944 | 27.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |