BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0106000 Os05g0106000|AK103444
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0106000 Zinc finger, C2H2-type domain containing protein 614 e-176
Os02g0551900 Zinc finger, C2H2-type domain containing protein 282 3e-76
AK110195 86 5e-17
AK119817 65 9e-11
>Os05g0106000 Zinc finger, C2H2-type domain containing protein
Length = 401
Score = 614 bits (1583), Expect = e-176, Method: Compositional matrix adjust.
Identities = 313/382 (81%), Positives = 313/382 (81%)
Query: 20 SQQHKXXXXXXXXXXWVKHWIPQDLATSSGKCALYKWVREDVYKNLKDGXXXXXXXXXXX 79
SQQHK WVKHWIPQDLATSSGKCALYKWVREDVYKNLKDG
Sbjct: 20 SQQHKPRRPPRPAARWVKHWIPQDLATSSGKCALYKWVREDVYKNLKDGKAVPEPEAVKP 79
Query: 80 XXXXXILFLCSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLI 139
ILFLCSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLI
Sbjct: 80 EPTTEILFLCSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLI 139
Query: 140 HTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKG 199
HTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKG
Sbjct: 140 HTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKG 199
Query: 200 HEKTGTPITAQYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAER 259
HEKTGTPITAQYV FAER
Sbjct: 200 HEKTGTPITAQYVPSSDKPQSSSKPATPATTKPTTPAATKTTTPASTKPTTPAPTSFAER 259
Query: 260 PYVCPYDGCGKAYIHSYKLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIV 319
PYVCPYDGCGKAYIHSYKLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIV
Sbjct: 260 PYVCPYDGCGKAYIHSYKLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIV 319
Query: 320 DLAPNPKRSKTNSGHKTPSSNKAYNVKISSVLPADISGVKNQWPGKYEDDSEETEEDQGN 379
DLAPNPKRSKTNSGHKTPSSNKAYNVKISSVLPADISGVKNQWPGKYEDDSEETEEDQGN
Sbjct: 320 DLAPNPKRSKTNSGHKTPSSNKAYNVKISSVLPADISGVKNQWPGKYEDDSEETEEDQGN 379
Query: 380 NIEDGWRYGNQNADDEETEYED 401
NIEDGWRYGNQNADDEETEYED
Sbjct: 380 NIEDGWRYGNQNADDEETEYED 401
>Os02g0551900 Zinc finger, C2H2-type domain containing protein
Length = 343
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/306 (47%), Positives = 176/306 (57%), Gaps = 23/306 (7%)
Query: 35 WVKHWIPQDLATSSGKCALYKWVREDVYKNLKDGXXXXXXXXXXXXXXXXILFLCSYENC 94
WVK W+PQDL + G CALYKWVRED LK +LFLCSYE C
Sbjct: 12 WVKEWVPQDLVVAGGPCALYKWVREDRLSALKSRDKEQEAELAKPEPTTEVLFLCSYEGC 71
Query: 95 GKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCG 154
GKTFVD ALRKHAHVH ERQY+C GC KKF+DSSKLKRH LIHTG+K+F+CPH GCG
Sbjct: 72 GKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCG 131
Query: 155 KAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVK-GHEKTGTPITAQYVX 213
KAFSLDFNL++H+KTH+++NYHVC +P C +RFT +SKL++H+K HEK G
Sbjct: 132 KAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEKGGL-------- 183
Query: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAERPYVCPYDGCGKAYI 273
A+RPYVCPYDGC KAYI
Sbjct: 184 ----------QNPGGSATNRSGLADHSHNSHTPKPSAAPPTPSADRPYVCPYDGCAKAYI 233
Query: 274 HSYKLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIVDLAPNPKRSKTNSG 333
H YKLNLHLK +HP H Q+ A A+ ++ R ++ + + L PKR
Sbjct: 234 HEYKLNLHLKKEHPNHYQD----AGAQAASSKMSKRRSKPSLTAKMPLPKVPKRRGYTEP 289
Query: 334 HKTPSS 339
++ P S
Sbjct: 290 YQPPVS 295
>AK110195
Length = 976
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 92 ENCGKTFVDVAALRKHAHVHN-ERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPH 150
E CGK+F + L +H +H ER Y C PGCGK F+ S L H +H+G++ C
Sbjct: 563 ETCGKSFSRRSDLARHRRIHTGERPYPCDYPGCGKSFIQRSALTVHSRVHSGERPHKCEF 622
Query: 151 PGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKGHE 201
GC K+FS +L H +TH +VC FP CGK FT + L H + H+
Sbjct: 623 EGCDKSFSDSSSLARHRRTHTGRRPYVCDFPKCGKMFTRRTTLNRHSRCHQ 673
>AK119817
Length = 931
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 123 CGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLRSHLKTHA 171
CGK+F S LK HH HTG+K F+C PGCG++FS+ NLR H K HA
Sbjct: 606 CGKRFSRPSSLKIHHHSHTGEKPFVCNEPGCGRSFSVQSNLRRHQKCHA 654
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,200,076
Number of extensions: 494246
Number of successful extensions: 2108
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2060
Number of HSP's successfully gapped: 12
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)