BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0106000 Os05g0106000|AK103444
         (401 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06634.1  | chr4:3764499-3766439 REVERSE LENGTH=388            276   1e-74
AT3G48430.1  | chr3:17935609-17940456 FORWARD LENGTH=1361          59   4e-09
AT5G04240.1  | chr5:1169544-1174638 FORWARD LENGTH=1341            57   2e-08

>AT4G06634.1 | chr4:3764499-3766439 REVERSE LENGTH=388
          Length = 387

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 206/373 (55%), Gaps = 47/373 (12%)

Query: 35  WVKHWIPQDLATSSGKCALYKWVREDVYKNLKDGXXXXXXXXXXXXXXXXILFLCSYENC 94
           W+K W+PQD+  + GKC L+KWV ED +  LK+                 ILFLCSY+ C
Sbjct: 27  WIKEWVPQDIVATGGKCHLHKWVTEDTFSRLKEKEKEPDVPEPEPEPTTEILFLCSYDGC 86

Query: 95  GKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCG 154
           GKTF DV+ALRKH+H+H ERQY+C + GCGKKF+DSSKLKRH+LIHTG++++IC + GCG
Sbjct: 87  GKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCG 146

Query: 155 KAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKG-HEKTGTPITAQYVX 213
           KAFSLDFNLRSH+KTH+ ENYH+CP+  C KR+  + KLK+HV   HEK G   T +Y  
Sbjct: 147 KAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTP 206

Query: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAERPYVCPYDGCGKAYI 273
                                                      ++RPY CPY+GC KAYI
Sbjct: 207 PAEKVLRTVKTPATVCGPS------------------------SDRPYACPYEGCEKAYI 242

Query: 274 HSYKLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIVDL----APNPK--- 326
           H YKL LHLK +HP H QEEN       ++H  NDR N+ +     D+    A N K   
Sbjct: 243 HEYKLKLHLKREHPGHLQEENADTPT-LNKHNGNDR-NEIDDGSDQDVYRKHASNGKGQT 300

Query: 327 ---RSKTNSGHKTPSSNKAYNVKISSVLPADISGVKNQWPGK--------YEDDSEETEE 375
              +S+     +TP +      K S+  PA     K  W  K         E++  E  E
Sbjct: 301 HKQQSRAKPNMRTPPAK--VGKKGSTSSPAKARIAKKPWQAKETFEEVEREEEEDSEETE 358

Query: 376 DQGNNIEDGWRYG 388
           +  +N+EDGWR+G
Sbjct: 359 EDRDNVEDGWRFG 371



>AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361
          Length = 1360

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 87   FLCSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDF 146
            + C+ E C  +F     L  H      ++ IC   GCGK F     L +H  +H+  +  
Sbjct: 1243 YQCNMEGCTMSFSSEKQLMLH------KRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPL 1296

Query: 147  ICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGK--RFTSDSKLKSHVKGH 200
             CP  GC   F   ++   H++ H     +VC  P CG+  RF SD        GH
Sbjct: 1297 KCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGH 1352



>AT5G04240.1 | chr5:1169544-1174638 FORWARD LENGTH=1341
          Length = 1340

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 89   CSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFIC 148
            C  E C  TF   A L+ H      ++  C   GCGKKF     L  H  +H  ++ F C
Sbjct: 1230 CYLEGCKMTFESKAKLQTH------KRNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFEC 1283

Query: 149  PHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGK--RFTSD 190
               GC   F   +    HL+ H  E  ++C    CG   RF SD
Sbjct: 1284 SWKGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSD 1327



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,913,978
Number of extensions: 326259
Number of successful extensions: 1531
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 9
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)