BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0542400 Os02g0542400|AK065397
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0542400 Conserved hypothetical protein 683 0.0
Os12g0163500 Homeodomain-like containing protein 239 3e-63
Os11g0163500 Homeodomain-like containing protein 231 6e-61
>Os02g0542400 Conserved hypothetical protein
Length = 410
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/410 (83%), Positives = 341/410 (83%)
Query: 1 MEGNLPPRXXXXXXXXXXXXXFDLEATMQPPPPFHFAQDPHLHHHQGMVPVRGNPMLDLG 60
MEGNLPPR FDLEATMQPPPPFHFAQDPHLHHHQGMVPVRGNPMLDLG
Sbjct: 1 MEGNLPPRGALVHGHGGGVGAFDLEATMQPPPPFHFAQDPHLHHHQGMVPVRGNPMLDLG 60
Query: 61 NVVKTSPSDEEDVDDXXXXXXXXXXXKEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDY 120
NVVKTSPSDEEDVDD KEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDY
Sbjct: 61 NVVKTSPSDEEDVDDGHHHGGGGGSGKEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDY 120
Query: 121 GTGSAARRKHAMLKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGT 180
GTGSAARRKHAMLKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGT
Sbjct: 121 GTGSAARRKHAMLKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGT 180
Query: 181 ACQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLR 240
ACQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLR
Sbjct: 181 ACQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLR 240
Query: 241 LALRSGEEHAKKNPFGYXXXXXXXXXXXXXXXXXLEVSAEDHHHGIHGAKRLKHDQEETH 300
LALRSGEEHAKKNPFGY LEVSAEDHHHGIHGAKRLKHDQEETH
Sbjct: 241 LALRSGEEHAKKNPFGYDDEDFSDDDDEDEEFDDLEVSAEDHHHGIHGAKRLKHDQEETH 300
Query: 301 FGSNLSEVAVIDMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFK 360
FGSNLSEVAVIDMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFK
Sbjct: 301 FGSNLSEVAVIDMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFK 360
Query: 361 WLRFSKEKDRELEKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKIFSD 410
WLRFSKEKDRELEKM PKKIFSD
Sbjct: 361 WLRFSKEKDRELEKMRLENEKMKLENERLELELKLKEIEMGIKPKKIFSD 410
>Os12g0163500 Homeodomain-like containing protein
Length = 432
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 184/304 (60%), Gaps = 21/304 (6%)
Query: 87 KEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDYGTGSAARRKHAMLKRKGKWRLVSAAM 146
K+ + W R+KW MVKLL++AV+Y ED D G G +R A++++KGKW+ +S M
Sbjct: 99 KKGAAWQRMKWTDSMVKLLITAVSYTGEDPGADSGAG---KRNSAIMQKKGKWKAISKVM 155
Query: 147 TERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPELLEGM-RLSGKLKEEAR 205
ERG VSPQQCEDKFNDLNKRYKR+T+ILGRGTAC++VE+ LL+ M LS K+K++AR
Sbjct: 156 GERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTACKIVENHALLDCMSNLSDKMKDDAR 215
Query: 206 KHLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLRLALRSGEEH----AKKNPFGYXXXX 261
K L+SKHL YEEMCSYHN N++ L +DPALQ+SL+LALR +EH
Sbjct: 216 KILSSKHLFYEEMCSYHNNNRVSLPEDPALQRSLQLALRCKDEHDLRRGTSGDADEDDQS 275
Query: 262 XXXXXXXXXXXXXLEVSAEDHHHGIHGAKRLKHDQEETHFGSNLSEVAV----------I 311
+ + +H RL DQE+ FG++ S +
Sbjct: 276 VDSDSEEENDEENYTLQGDKSALPMHKRLRLMTDQEDVGFGNSSSSHGCSRRSDSHGISL 335
Query: 312 DMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFKWLRFSKEKDRE 371
D+NK +G+ A+K +T + LE++RL+I+ Q + + ++ KW RFSK KDRE
Sbjct: 336 DINKAFPDGTNLALAQKDLAT---QSADLEEQRLQIEVQAVYLAKQRLKWERFSKNKDRE 392
Query: 372 LEKM 375
LE+M
Sbjct: 393 LEQM 396
>Os11g0163500 Homeodomain-like containing protein
Length = 483
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 184/305 (60%), Gaps = 26/305 (8%)
Query: 87 KEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDYGTGSAARRKHAMLKRKGKWRLVSAAM 146
K+ S WHR+KW MVKLL++AV+Y ED D G G RR ++M+++KGKW+ +S M
Sbjct: 153 KKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGG---RRNYSMMQKKGKWKAISKVM 209
Query: 147 TERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPELLEGMRLSGKLKEEARK 206
ERG VSPQQCEDKFNDLNKRYKR+T+ILGRGTAC VVE+ LL+ M +S K+KE+ARK
Sbjct: 210 GERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISEKMKEDARK 269
Query: 207 HLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLRLALRSGEEHAKKNPFGYXXXXXXXXX 266
LNSKHL YEEMCSYHN N++ L +DPALQ+SL+LALR E+ N F
Sbjct: 270 ILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKED----NDFMRHASGDAELD 325
Query: 267 XXXXXXXXLEVSAEDHH---HGIHGA---KRLKH--DQEETHFGSNLSE--------VAV 310
E + E+H I G KR+ H D + F ++ S V
Sbjct: 326 DDQSEDSDYEENEEEHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSDPYDV 385
Query: 311 IDMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFKWLRFSKEKDR 370
+D+NK +G +K + ++ ++K RL+I+ + +++ ++ KW F K KD
Sbjct: 386 LDINKPFPDGCDLALVQKDLA---LKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDL 442
Query: 371 ELEKM 375
ELEK+
Sbjct: 443 ELEKL 447
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,327,300
Number of extensions: 548341
Number of successful extensions: 1483
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)