BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0529500 Os02g0529500|AK069978
         (259 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0529500  Similar to SNAP25-like protein C (Fragment)         471   e-133
Os02g0437200  Similar to SNAP-34                                  249   1e-66
Os03g0212400  Similar to SNAP-28                                  223   7e-59

>Os02g0529500 Similar to SNAP25-like protein C (Fragment)
          Length = 259

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/259 (93%), Positives = 242/259 (93%)

Query: 1   MPVSRGGKAASSKADPFDSDSDSDLVPKKKPGAYTAPSGAAKARYKDDFRDSGGLEQQSV 60
           MPVSRGGKAASSKADPFDSDSDSDLVPKKKPGAYTAPSGAAKARYKDDFRDSGGLEQQSV
Sbjct: 1   MPVSRGGKAASSKADPFDSDSDSDLVPKKKPGAYTAPSGAAKARYKDDFRDSGGLEQQSV 60

Query: 61  QELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQGQQISRTHEKAVEIDQDX 120
           QELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQGQQISRTHEKAVEIDQD 
Sbjct: 61  QELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQGQQISRTHEKAVEIDQDL 120

Query: 121 XXXXXXXXXXXXXXXXPWKPKKTRQIKGPAHVSDDSFKKKASHIEQREKLGLSPSGKSAN 180
                           PWKPKKTRQIKGPAHVSDDSFKKKASHIEQREKLGLSPSGKSAN
Sbjct: 121 SKGESLLGSLGGFFSKPWKPKKTRQIKGPAHVSDDSFKKKASHIEQREKLGLSPSGKSAN 180

Query: 181 RSYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVD 240
           RSYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVD
Sbjct: 181 RSYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVD 240

Query: 241 ELNSRVKGANQRARKLIEK 259
           ELNSRVKGANQRARKLIEK
Sbjct: 241 ELNSRVKGANQRARKLIEK 259



>Os02g0437200 Similar to SNAP-34
          Length = 283

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/273 (49%), Positives = 179/273 (65%), Gaps = 21/273 (7%)

Query: 8   KAASSKADPFDSDSDSDLVPKKKPGAYTAPSGA-------------------AKARYKDD 48
           K  S  ++PFDSDSD     ++   A + P  A                   A++RY++D
Sbjct: 11  KKPSRSSNPFDSDSDDGGREQRPARASSVPPPADQRGSLFGGGDGFSASSAAARSRYRND 70

Query: 49  FRDSGGLEQQSVQELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQGQQISR 108
           FRD+GG+E QSVQELE YAAYKAEETT  + GC+RIAE +R+ A+ +LVT+++QGQQI+R
Sbjct: 71  FRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQITR 130

Query: 109 THEKAVEIDQDXXXXXXXXXXXXXXXXXPWKPKKTRQIKGPAHVSDDSFKKKASHIEQRE 168
           TH   ++IDQD                  WKPKK  +I+GP    DDSF +K SH+EQR 
Sbjct: 131 THMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQRH 190

Query: 169 KLGLS--PSGKSANRSYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELD 226
           KLGLS  P   +A + ++EPT+A++KV++EK KQDD L DLS +L +LKGMA DMG+E+D
Sbjct: 191 KLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGTEID 250

Query: 227 RQNKALDDLQGDVDELNSRVKGANQRARKLIEK 259
           RQ KAL D + D DELN R+KGAN RAR+L+ K
Sbjct: 251 RQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283



>Os03g0212400 Similar to SNAP-28
          Length = 251

 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 123/248 (49%), Positives = 161/248 (64%), Gaps = 18/248 (7%)

Query: 13  KADPFDSDSDSDLVPKKKPGAYTAPSGAAKARYKDDFRDSGGLEQQSVQELENYAAYKAE 72
           + +PFDSDSDS+ VP +   A + P      R  D          QS+QELE+YA  K E
Sbjct: 21  RTNPFDSDSDSE-VPSRPSRAQSVP-----VRRTD----------QSIQELEDYAVDKVE 64

Query: 73  ETTDALGGCLRIAENIREDAANTLVTLNKQGQQISRTHEKAVEIDQDXXXXXXXXXXXXX 132
           ET+  +  C+R AE IREDA  TLVTL++QG+QI+RTH  A +I+ D             
Sbjct: 65  ETSRKVNDCVRAAEAIREDATKTLVTLHRQGEQITRTHRVAADIEHDLSMSEKLLGSLGG 124

Query: 133 XXXXPWKPKKTRQIKGPAHVSDDSFKKKASHIEQREKLGLSPSGK-SANRSYAEPTTAME 191
                WKPK+ +QIKGP    ++SF   A+H+EQR++LG+S + + S N+ +  P TA+E
Sbjct: 125 LFSKTWKPKRNQQIKGPIS-QNNSFTSSANHMEQRQRLGISSTRQPSPNQVHRSPATAIE 183

Query: 192 KVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVDELNSRVKGANQ 251
           KVQVE  KQDDAL DLS +LG+LKGMA DMG+E++RQNK+LD    DVDELN RVKGANQ
Sbjct: 184 KVQVEIAKQDDALSDLSNMLGELKGMALDMGTEIERQNKSLDAFGDDVDELNFRVKGANQ 243

Query: 252 RARKLIEK 259
           R R+L+ K
Sbjct: 244 RGRRLLGK 251



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,150,983
Number of extensions: 329654
Number of successful extensions: 1335
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1327
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)