Os02g0529500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0529500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNAP25-like protein C (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.9	(0.0385)	R²	:	0.238
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.95	(0.332)	R²_dE	:	0.242	R²_E	:	0.236
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0709	(0.0819)	R²_dN8	:	0.00166	R²_N8	:	-0.00415
σ	:	0.722
deviance	:	240.48
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	90.53
memory length	:	1615
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.2
open length of G	:	0.516

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
220.64	0.698	2.89	0.612	0.219	3.27	-0.0567	5.72	0.128	17.8	91.53	1608	2.88	1.11
228.12	0.703	2.89	0.62	0.279	3.93	-0.34	--	0.179	18.1	91.2	1611	3	0.7
220.58	0.692	2.89	0.615	0.217	3.28	--	5.84	0.129	17.7	91.5	1603	2.85	1.13
228.22	0.704	2.89	0.608	0.243	3.93	--	--	0.158	17.9	91.04	1610	3.12	0.59
222.71	0.695	2.88	0.612	--	3.16	--	6.15	0.124	--	91.5	1603	2.73	1.25
302.04	0.815	2.92	0.675	0.0975	--	-0.432	--	-0.000328	17.7	--	--	--	--
302.47	0.814	2.92	0.678	0.0971	--	--	--	-0.00189	16.8	--	--	--	--
231.2	0.708	2.88	0.606	--	3.84	--	--	0.151	--	91	1610	3.11	0.617
237.79	0.718	2.9	--	0.228	4.08	--	--	0.0906	17.6	90.61	1610	3.13	0.597
302.97	0.813	2.92	0.674	--	--	--	--	-0.00441	--	--	--	--	--
314.57	0.83	2.94	--	0.0849	--	--	--	-0.0774	17	--	--	--	--
240.48	0.722	2.9	--	--	3.95	--	--	0.0709	--	90.53	1615	3.2	0.516
314.95	0.828	2.94	--	--	--	--	--	-0.0792	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	224.73	humidity	90	1440	< th	dose dependent	rect.	3	1
3	229.62	humidity	70	1440	> th	dose dependent	rect.	3	3
8	230.65	humidity	90	1440	< th	dose dependent	rect.	2	4
12	230.92	humidity	50	1440	> th	dose dependent	rect.	5	1
16	231.30	humidity	50	1440	> th	dose dependent	rect.	3	1
40	233.24	wind	5	4320	> th	dose independent	rect.	20	2
50	234.09	wind	5	4320	> th	dose dependent	rect.	19	5
55	234.52	wind	5	4320	< th	dose independent	rect.	20	2
70	235.58	humidity	80	1440	< th	dose independent	rect.	22	1
90	237.12	wind	5	4320	> th	dose dependent	rect.	21	1
95	237.49	humidity	90	1440	< th	dose dependent	rect.	5	1
104	238.09	humidity	90	1440	< th	dose independent	rect.	2	4
122	239.12	wind	7	4320	< th	dose independent	rect.	18	7
149	241.17	humidity	90	1440	> th	dose independent	rect.	5	1
159	241.70	wind	7	4320	> th	dose independent	rect.	18	7
193	243.44	humidity	80	1440	> th	dose independent	rect.	22	4
204	243.72	humidity	80	1440	< th	dose independent	rect.	21	10
217	243.98	wind	7	1440	> th	dose independent	rect.	8	1
224	244.44	humidity	80	1440	> th	dose independent	rect.	22	9
228	244.58	humidity	80	270	< th	dose independent	rect.	23	8
239	244.87	humidity	80	1440	< th	dose dependent	rect.	22	1
251	245.24	humidity	80	1440	> th	dose independent	rect.	22	1
262	245.58	humidity	90	1440	> th	dose independent	rect.	1	5
297	246.72	wind	7	720	> th	dose dependent	rect.	20	1
351	248.03	humidity	80	270	< th	dose dependent	rect.	23	8
352	248.06	wind	7	720	> th	dose independent	rect.	20	1
367	248.42	wind	7	1440	< th	dose independent	rect.	8	1
503	250.70	wind	7	1440	< th	dose independent	rect.	5	4
522	251.02	temperature	20	1440	> th	dose independent	rect.	18	1
544	251.35	temperature	25	1440	< th	dose dependent	rect.	11	1
557	251.70	wind	5	1440	> th	dose dependent	rect.	8	1
595	252.22	humidity	80	1440	> th	dose independent	rect.	1	1
636	252.74	atmosphere	995	14400	< th	dose independent	rect.	17	2
640	252.74	atmosphere	995	14400	< th	dose dependent	rect.	17	2
714	253.90	atmosphere	995	14400	> th	dose independent	rect.	17	2
724	253.97	temperature	20	4320	> th	dose independent	rect.	21	1
762	254.66	wind	7	1440	< th	dose independent	rect.	3	6
766	254.69	wind	5	720	> th	dose dependent	rect.	19	4
799	255.28	temperature	20	4320	< th	dose independent	rect.	21	1
844	255.79	temperature	20	1440	< th	dose independent	rect.	18	1
874	256.08	atmosphere	995	14400	> th	dose independent	rect.	10	9
878	256.13	atmosphere	995	14400	> th	dose independent	rect.	12	7
897	256.30	wind	5	720	> th	dose independent	rect.	19	4
944	256.72	temperature	20	4320	> th	dose independent	rect.	18	5