BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0529500 Os02g0529500|AK069978
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61210.1 | chr5:24624027-24625366 FORWARD LENGTH=301 247 4e-66
AT1G13890.1 | chr1:4751581-4752844 FORWARD LENGTH=264 236 1e-62
AT5G07880.1 | chr5:2515587-2516694 REVERSE LENGTH=252 205 2e-53
>AT5G61210.1 | chr5:24624027-24625366 FORWARD LENGTH=301
Length = 300
Score = 247 bits (631), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/280 (49%), Positives = 175/280 (62%), Gaps = 31/280 (11%)
Query: 11 SSKADPFDSDSDSD----LVPKKKPGA------YTAPSGA------------------AK 42
SSK +PFDSD +SD L P K+ + T P G +K
Sbjct: 21 SSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADMTNPFGGERVQKGDSSSSKQSLFSNSK 80
Query: 43 ARYKDDFRDSGGLEQQSVQELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQ 102
+YK++FRDSGG+E QSVQELE YA YKAEETT ++ GCL++AE+IR DA TLV L+ Q
Sbjct: 81 YQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHDQ 140
Query: 103 GQQISRTHEKAVEIDQDXXXXXXXXXXXXXXXXXPWKPKKTRQIKGPAHVSDDSFKKKAS 162
G+QI+RTH KAVEID D WKPKKTR I GP DDS ++ +
Sbjct: 141 GEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSKTWKPKKTRPINGPVVTRDDSPTRRVN 200
Query: 163 HIEQREKLGL--SPSGKSANRS-YAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMAC 219
H+E+REKLGL +P G+S R E A ++V++EK KQDD L DLS +LG+LK MA
Sbjct: 201 HLEKREKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAV 260
Query: 220 DMGSELDRQNKALDDLQGDVDELNSRVKGANQRARKLIEK 259
DMGSE+++QNK LD L DVDELN RV+ +NQR R+L+ K
Sbjct: 261 DMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQRGRRLLGK 300
>AT1G13890.1 | chr1:4751581-4752844 FORWARD LENGTH=264
Length = 263
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 152/217 (70%), Gaps = 1/217 (0%)
Query: 44 RYKDDFRDSGGLEQQSVQELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQG 103
+YK+ F DSGGL+ Q+ +ELE YA YKAEETT + CL+IAE+IR D A TL L++QG
Sbjct: 47 KYKNGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQG 106
Query: 104 QQISRTHEKAVEIDQDXXXXXXXXXXXXXXXXXPWKPKKTRQIKGPAHVSDDSFKKKASH 163
+QI+RTHE AV++D+D PWKPKKT+ I GP D KK +H
Sbjct: 107 EQINRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENH 166
Query: 164 IEQREKLGLSPSGKSANR-SYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMG 222
E+REKLGL G+S+++ + +PT A++KV+ EK KQDD L DLS +LG LK MA DMG
Sbjct: 167 KEEREKLGLGAKGRSSSQPALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAVDMG 226
Query: 223 SELDRQNKALDDLQGDVDELNSRVKGANQRARKLIEK 259
SE+D+QNKALD L DVDELNSRV+GANQRAR L+ K
Sbjct: 227 SEIDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263
>AT5G07880.1 | chr5:2515587-2516694 REVERSE LENGTH=252
Length = 251
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 149/249 (59%), Gaps = 2/249 (0%)
Query: 11 SSKADPFDSDSDSDLVPKKKPGAYTAPSGAAKARYKDDFRDSGGLEQQSVQELENYAAYK 70
+S +PFD + ++ P + R+ + SGG E Q+VQELE+YA Y
Sbjct: 5 NSSWNPFDDEKEAAKSFSLNPFDDDDDDKEVEKRFTSSLKPSGGKENQTVQELESYAVYN 64
Query: 71 AEETTDALGGCLRIAENIREDAANTLVTLNKQGQQISRTHEKAVEIDQDXXXXXXXXXXX 130
+EETT + GCL++AE IR DA+ TLV LN+QG QI+RTH+K V++D
Sbjct: 65 SEETTKTVQGCLKVAEEIRCDASKTLVMLNEQGDQITRTHQKTVDLDHHLSRGEKILGRL 124
Query: 131 XXXXXXPWKPKKTRQIKGPAHVSDDSFKKKASHIEQREKLGLSPSGKSANRSYAEPTTAM 190
WKPKK+R I GP DS K+K ++ REKLGL+PS K +++ E A
Sbjct: 125 GGVFSRTWKPKKSRSITGPVITKGDSPKRKVIDLKTREKLGLNPSLKPKSKTLPEAVDAY 184
Query: 191 EKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVDELNSRVKGAN 250
+K Q+ KQD+AL DLS +LG+LK MA DMG+ ++RQ LD LQ + DELN RVK +N
Sbjct: 185 QKTQI--AKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRVKQSN 242
Query: 251 QRARKLIEK 259
QRAR L+ K
Sbjct: 243 QRARYLLRK 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.126 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,129,570
Number of extensions: 204992
Number of successful extensions: 721
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 6
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 110 (47.0 bits)