Os03g0212400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SNAP-28.
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Os03g0212400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SNAP-28.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.06 | 0.37 | 9.49 | 0.659 | 1.23 | -0.644 | -0.733 | 0.999 | -0.208 | 19 | 91.25 | 271 | -- | -- |
| 63.06 | 0.37 | 9.49 | 0.672 | 1.23 | -0.665 | -1.1 | -- | -0.2 | 19 | 92 | 271 | -- | -- |
| 62.96 | 0.37 | 9.49 | 0.655 | 1.24 | -0.657 | -- | 1.57 | -0.22 | 18.9 | 91.74 | 298 | -- | -- |
| 66.13 | 0.379 | 9.5 | 0.686 | 1.25 | -0.597 | -- | -- | -0.201 | 18.9 | 92.01 | 271 | -- | -- |
| 104.74 | 0.477 | 9.47 | 0.527 | -- | -1.5 | -- | 1.74 | -0.237 | -- | 63.49 | 485 | -- | -- |
| 69.14 | 0.39 | 9.48 | 0.631 | 1.44 | -- | -0.823 | -- | -0.11 | 18.7 | -- | -- | -- | -- |
| 70.86 | 0.394 | 9.48 | 0.645 | 1.43 | -- | -- | -- | -0.112 | 18.7 | -- | -- | -- | -- |
| 109.61 | 0.488 | 9.47 | 0.645 | -- | -1.4 | -- | -- | -0.231 | -- | 65.79 | 486 | -- | -- |
| 78.56 | 0.413 | 9.51 | -- | 1.27 | -0.471 | -- | -- | -0.249 | 19 | 92 | 273 | -- | -- |
| 178.2 | 0.624 | 9.45 | 0.612 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 81.82 | 0.423 | 9.5 | -- | 1.43 | -- | -- | -- | -0.184 | 18.7 | -- | -- | -- | -- |
| 120.43 | 0.511 | 9.48 | -- | -- | -1.42 | -- | -- | -0.291 | -- | 64 | 495 | -- | -- |
| 188.08 | 0.64 | 9.46 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 3 | 54.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 4 | 55.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 6 | 55.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 12 |
| 33 | 55.74 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 146 | 56.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 199 | 57.30 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 214 | 57.39 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 7 |
| 215 | 57.39 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 230 | 57.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 250 | 57.70 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 10 |
| 275 | 57.90 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 24 | 23 |
| 297 | 58.01 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 4 |
| 305 | 58.04 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 8 |
| 397 | 58.50 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 1 |
| 402 | 58.51 | temperature | 15 | 10 | > th | dose dependent | sin | 13 | NA |
| 465 | 58.73 | temperature | 15 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 504 | 58.87 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 8 |
| 551 | 59.04 | temperature | 20 | 30 | < th | dose independent | sin | 15 | NA |
| 563 | 59.06 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 2 |
| 585 | 59.11 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 651 | 59.25 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 23 | 4 |
| 811 | 59.61 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 20 |
| 815 | 59.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 822 | 59.64 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 827 | 59.66 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 1 |
| 845 | 59.70 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |
| 879 | 59.76 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 13 |
| 913 | 59.82 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 969 | 59.94 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 988 | 59.96 | radiation | 40 | 30 | < th | dose dependent | rect. | 3 | 20 |
| 995 | 59.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 1000 | 59.99 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 1 |