BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0524600 Os02g0524600|012-054-B11
(424 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0524600 WD40-like domain containing protein 705 0.0
Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein ... 331 5e-91
Os02g0245100 Similar to Peroxisomal targeting signal type 2... 65 8e-11
>Os02g0524600 WD40-like domain containing protein
Length = 424
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/424 (83%), Positives = 355/424 (83%)
Query: 1 IPHPIPSPQQLXXXXXXXXXXXXEAWADQEQXXXXXXXXXXXEAKRSEIYTYEAGWHIYG 60
IPHPIPSPQQL EAWADQEQ EAKRSEIYTYEAGWHIYG
Sbjct: 1 IPHPIPSPQQLGFGGGGGAGGDGEAWADQEQGNGGGRGGGGGEAKRSEIYTYEAGWHIYG 60
Query: 61 MNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVPDPH 120
MNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVPDPH
Sbjct: 61 MNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVPDPH 120
Query: 121 SVRPDLLATSADHLRIWRIPSPDEXXXXXXXSSNSGSVRCNGTASPDVELRCELNGNRNS 180
SVRPDLLATSADHLRIWRIPSPDE SSNSGSVRCNGTASPDVELRCELNGNRNS
Sbjct: 121 SVRPDLLATSADHLRIWRIPSPDEAAAAAAASSNSGSVRCNGTASPDVELRCELNGNRNS 180
Query: 181 DYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVF 240
DYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVF
Sbjct: 181 DYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVF 240
Query: 241 ASVSADGSVRVFDLRDKEHSTIIYEXXXXXXXXXXXXXXXXXXPTPLVRLGWNKQDPRYM 300
ASVSADGSVRVFDLRDKEHSTIIYE PTPLVRLGWNKQDPRYM
Sbjct: 241 ASVSADGSVRVFDLRDKEHSTIIYESGSGGSSNSAGADGGAASPTPLVRLGWNKQDPRYM 300
Query: 301 ATIIMDSPKVVVLDIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLS 360
ATIIMDSPKVVVLDIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLS
Sbjct: 301 ATIIMDSPKVVVLDIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLS 360
Query: 361 SMGTXXXXXXXXXXXXXXXXXXXXXLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQ 420
SMGT LDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQ
Sbjct: 361 SMGTGSNNGGNGNGNAAAAAAAEGGLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQ 420
Query: 421 ILRV 424
ILRV
Sbjct: 421 ILRV 424
>Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)
Length = 355
Score = 331 bits (849), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/403 (46%), Positives = 234/403 (58%), Gaps = 55/403 (13%)
Query: 29 QEQXXXXXXXXXXXEAKRSEIYTYEAGWHIYGMNWSVRRDKKYRLAIASLLEQHNNHVQV 88
EQ EA+ +T E IY + +S LA S LE +N V +
Sbjct: 1 MEQPKPPSVAASAAEAQNPNAFTCELPHSIYALAFS---PSAPVLAAGSFLEDLHNRVSL 57
Query: 89 VQLD-----ESSGDIAPVLTFDHPYPPTKTMFVPDPHSVRPDLLATSADHLRIWRIPSPD 143
+ D +S P L+FDHPYPPTK F P S P LLA+S+D LR+W P D
Sbjct: 58 LSFDPVHPTAASFRALPALSFDHPYPPTKLQFHPRAASA-PHLLASSSDALRLWLAPLDD 116
Query: 144 EXXXXXXXSSNSGSVRCNGTASPDVELRCELNGNRNS--DYCGPLTSFDWNDADPRRIGT 201
+ ELR L+ + S ++C PLTSFDWN+A+PRRIGT
Sbjct: 117 LAATATAAAP---------------ELRSVLDNRKTSASEFCAPLTSFDWNEAEPRRIGT 161
Query: 202 SSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHST 261
+SIDTTCTIWD+ER V+TQLIAHDK V+DIAWG G+FASVSADGSVRVFDLRDKEHST
Sbjct: 162 ASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGENGIFASVSADGSVRVFDLRDKEHST 221
Query: 262 IIYEXXXXXXXXXXXXXXXXXXPTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLP 321
I YE TPL+RL WN+ D YMAT++MDS VVVLD+R P +P
Sbjct: 222 IFYESPRPD--------------TPLLRLAWNRYDFHYMATLLMDSSAVVVLDMRAPGVP 267
Query: 322 VVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGTXXXXXXXXXXXXXXXXX 381
V ELHRH + NA+AWAP ++ H+C+AGDD QALIW+L +
Sbjct: 268 VAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWELPA---------------TPGAV 312
Query: 382 XXXXLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQILRV 424
+DP++ Y AGAEI QLQW+A P+W++IAF K+Q+LRV
Sbjct: 313 PAEGIDPVMVYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV 355
>Os02g0245100 Similar to Peroxisomal targeting signal type 2 receptor
Length = 322
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 24/209 (11%)
Query: 152 SSNSGSVRCNGTASPDVELRCELNGNRNSDYCGPLTSFDWNDADPRRIGTSSIDTTCTIW 211
+S GSVR A P + L + G DWN ++S D T +W
Sbjct: 84 ASGDGSVRLFDVALPPAQNPVRLLREHAREVHG----LDWNPVRRDAFLSASWDDTLKLW 139
Query: 212 DVEREAVDTQLIAHDKEVYDIAWGGA--GVFASVSADGSVRVFDLRDKEHSTIIYEXXXX 269
+R A H+ VY AW VFAS S D + RV+D+R+ + +I
Sbjct: 140 SPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVREPAPTLVI------ 193
Query: 270 XXXXXXXXXXXXXXPTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELHRHH 329
++ L W+K DP +AT +D + V D+R P P+ +L H
Sbjct: 194 -----------PAHDHEVLSLDWDKYDPSILATGSVDK-SIRVWDVRAPRAPLAQLAGHG 241
Query: 330 SPVNAIAWAPHSSCHICTAGDDSQALIWD 358
V + ++PH + + D +WD
Sbjct: 242 YAVKRVKFSPHRQGMLMSCSYDMTVCMWD 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,905,640
Number of extensions: 541782
Number of successful extensions: 1309
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1305
Number of HSP's successfully gapped: 3
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)