BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0524500 Os02g0524500|Os02g0524500
         (457 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0524500  Zinc finger, RING-type domain containing protein    398   e-111
Os04g0403200  Zinc finger, RING-type domain containing protein     74   2e-13
Os04g0402500  Zinc finger, RING-type domain containing protein     69   9e-12
AK120583                                                           68   2e-11

>Os02g0524500 Zinc finger, RING-type domain containing protein
          Length = 457

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/394 (57%), Positives = 225/394 (57%)

Query: 1   MAVQAQXXXXXXXXXXXXXXXXXXXXPRAAPRACMHXXXXXXXXXXXXGTHXXXXXXXXX 60
           MAVQAQ                    PRAAPRACMH            GTH         
Sbjct: 1   MAVQAQYVAHASRSSSSAAYAIRSVSPRAAPRACMHARPRLPSRARALGTHAPRAPPPSS 60

Query: 61  XXXDHLFILARVANNFLRRPALENAAPSSGASALFLDEXXXXXXXXXXXXXXXXXXXXXX 120
              DHLFILARVANNFLRRPALENAAPSSGASALFLDE                      
Sbjct: 61  SAADHLFILARVANNFLRRPALENAAPSSGASALFLDEAVSAALLQQQLVVAAAAVGGGG 120

Query: 121 XXXXTAVFSDLRSELTCSQRRFDDFGGGFVPRKXXXXXXXXXXXXXLLMSSSVMEGGGHR 180
               TAVFSDLRSELTCSQRRFDDFGGGFVPRK             LLMSSSVMEGGGHR
Sbjct: 121 NNNNTAVFSDLRSELTCSQRRFDDFGGGFVPRKRARVGGEGEAAAGLLMSSSVMEGGGHR 180

Query: 181 AXXXXXXXQVTPQAFGDVHKXXXXXXXXXXXXXXXXPVCGGGLLLSHLYRQSVEVDALVR 240
           A       QVTPQAFGDVHK                PVCGGGLLLSHLYRQSVEVDALVR
Sbjct: 181 ALLPPPPPQVTPQAFGDVHKSSSRVVGSGAASTSGRPVCGGGLLLSHLYRQSVEVDALVR 240

Query: 241 FEVRATDRAFIYRHGRWSSVSFCLLSSLEWAFDSICTYLQNXXXXXXXXXXXXXXXXXXX 300
           FEVRATDRAFIYRHGRWSSVSFCLLSSLEWAFDSICTYLQN                   
Sbjct: 241 FEVRATDRAFIYRHGRWSSVSFCLLSSLEWAFDSICTYLQNERLRAGLEEARRRHLRAVV 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDERLRQMGAEGQAWLGIAKSHEAAAAGLRATL 360
                                       DERLRQMGAEGQAWLGIAKSHEAAAAGLRATL
Sbjct: 301 SAVDRAAARRLHAAEAELERALGRNAELDERLRQMGAEGQAWLGIAKSHEAAAAGLRATL 360

Query: 361 DQLLQSPCXXXXXXXXXXXXXXXXQSCCFVQAPD 394
           DQLLQSPC                QSCCFVQAPD
Sbjct: 361 DQLLQSPCAAAAAAAEGEGDAEDAQSCCFVQAPD 394



>Os04g0403200 Zinc finger, RING-type domain containing protein
          Length = 347

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 329 DERLRQMGAEGQAWLGIAKSHEAAAAGLRATLDQLLQSPC 368
           +ERLRQM AEGQAWL +AKSHEA AAGLRATLDQLLQSPC
Sbjct: 211 EERLRQMTAEGQAWLSVAKSHEAVAAGLRATLDQLLQSPC 250



>Os04g0402500 Zinc finger, RING-type domain containing protein
          Length = 316

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 38/41 (92%), Gaps = 1/41 (2%)

Query: 329 DERLRQMGAEGQAWLGIAKSHEAAAAGLRATLDQ-LLQSPC 368
           +E+LRQ+ AEGQAW+G+AKSHEA AAGLRATLDQ LLQSPC
Sbjct: 190 EEKLRQVSAEGQAWMGVAKSHEAVAAGLRATLDQLLLQSPC 230



>AK120583 
          Length = 346

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 38/41 (92%), Gaps = 1/41 (2%)

Query: 329 DERLRQMGAEGQAWLGIAKSHEAAAAGLRATLDQ-LLQSPC 368
           +E+LRQ+ AEGQAW+G+AKSHEA AAGLRATLDQ LLQSPC
Sbjct: 91  EEKLRQVSAEGQAWMGVAKSHEAVAAGLRATLDQLLLQSPC 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,797,423
Number of extensions: 184423
Number of successful extensions: 460
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 5
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)