Os04g0402500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0402500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.67 | 0.553 | 11.3 | 2.32 | 1.06 | 3.23 | -0.0729 | 1.9 | 0.439 | 9.8 | 31.5 | 272 | -- | -- |
| 141.9 | 0.555 | 11.3 | 2.63 | 1.05 | 3.31 | -0.116 | -- | 0.51 | 9.79 | 32.1 | 268 | -- | -- |
| 138.69 | 0.548 | 11.3 | 2.32 | 1.06 | 3.23 | -- | 1.89 | 0.439 | 9.81 | 31.5 | 271 | -- | -- |
| 141.91 | 0.555 | 11.3 | 2.64 | 1.06 | 3.28 | -- | -- | 0.516 | 9.78 | 31.95 | 268 | -- | -- |
| 169.58 | 0.607 | 11.4 | 2.5 | -- | 3.84 | -- | 2.17 | 0.517 | -- | 31.77 | 510 | -- | -- |
| 269.08 | 0.769 | 11.4 | 1.86 | 1.6 | -- | 0.466 | -- | -0.0404 | 7.28 | -- | -- | -- | -- |
| 269.66 | 0.769 | 11.4 | 1.87 | 1.6 | -- | -- | -- | -0.0411 | 7.3 | -- | -- | -- | -- |
| 172.52 | 0.612 | 11.3 | 2.78 | -- | 3.82 | -- | -- | 0.601 | -- | 32.1 | 509 | -- | -- |
| 304.77 | 0.813 | 11.4 | -- | 1.22 | 2.1 | -- | -- | 0.0403 | 8.49 | 32.83 | 263 | -- | -- |
| 406 | 0.942 | 11.5 | 1.89 | -- | -- | -- | -- | -0.0141 | -- | -- | -- | -- | -- |
| 361.55 | 0.889 | 11.5 | -- | 1.62 | -- | -- | -- | -0.249 | 7.22 | -- | -- | -- | -- |
| 359.03 | 0.883 | 11.4 | -- | -- | 2.92 | -- | -- | 0.138 | -- | 33.4 | 465 | -- | -- |
| 500.72 | 1.04 | 11.5 | -- | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 2 | 138.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 3 | 138.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 4 | 138.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 15 | 139.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 17 | 139.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 18 | 139.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 22 | 139.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 24 | 139.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 27 | 139.84 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 35 | 140.04 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 62 | 140.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 74 | 140.90 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 83 | 141.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 151 | 141.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 164 | 142.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 203 | 142.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 209 | 142.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 221 | 142.58 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 332 | 143.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 421 | 143.86 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 682 | 144.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 696 | 145.01 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 712 | 145.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 788 | 145.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 800 | 145.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 851 | 145.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 979 | 145.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |