Os04g0403200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0403200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.42 | 0.454 | 10.9 | 1.3 | 1.11 | -2.07 | 1.36 | 3.07 | -0.0239 | 1.77 | 25.14 | 30 | -- | -- |
| 95.29 | 0.455 | 10.9 | 1 | 1.17 | -1.73 | 1.07 | -- | -0.00718 | 1.47 | 23.35 | 90 | -- | -- |
| 99.51 | 0.465 | 10.9 | 1.11 | 1.11 | -2.04 | -- | 1.73 | -0.0697 | 1.7 | 25.23 | 31 | -- | -- |
| 99.08 | 0.464 | 10.9 | 0.976 | 1.13 | -1.81 | -- | -- | -0.012 | 1.41 | 23.54 | 89 | -- | -- |
| 143.55 | 0.558 | 10.8 | 1.39 | -- | -3.03 | -- | 1.92 | 0.169 | -- | 24.16 | 13 | -- | -- |
| 145.45 | 0.565 | 10.9 | 0.675 | 1.82 | -- | 1.52 | -- | -0.251 | 2.28 | -- | -- | -- | -- |
| 153.93 | 0.581 | 10.9 | 0.633 | 1.82 | -- | -- | -- | -0.26 | 2.27 | -- | -- | -- | -- |
| 144.88 | 0.561 | 10.8 | 1.14 | -- | -2.88 | -- | -- | 0.0932 | -- | 24.1 | 13 | -- | -- |
| 122.09 | 0.515 | 10.9 | -- | 1.23 | -1.56 | -- | -- | -0.179 | 1.57 | 24.2 | 88 | -- | -- |
| 350.41 | 0.875 | 10.9 | 0.709 | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
| 164.48 | 0.6 | 10.9 | -- | 1.83 | -- | -- | -- | -0.33 | 2.28 | -- | -- | -- | -- |
| 178.26 | 0.622 | 10.9 | -- | -- | -2.7 | -- | -- | -0.047 | -- | 24.2 | 12 | -- | -- |
| 363.67 | 0.89 | 10.9 | -- | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.58 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 3 | 87.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 6 | 88.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 8 | 89.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 18 | 90.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 52 | 91.14 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 89 | 91.90 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 118 | 92.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 130 | 92.74 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 235 | 93.50 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 367 | 94.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 417 | 95.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 479 | 95.87 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 12 |
| 510 | 96.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 589 | 96.96 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 688 | 97.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 727 | 98.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 774 | 98.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 838 | 98.86 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 845 | 98.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 860 | 98.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |