BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0403200 Os04g0403200|AK120702
         (347 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35070.1  | chr4:16694488-16695387 FORWARD LENGTH=266           56   3e-08

>AT4G35070.1 | chr4:16694488-16695387 FORWARD LENGTH=266
          Length = 265

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%)

Query: 144 LLSQLYHQGVEIDALVRLESERMRAGLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 203
           L +Q+  Q  EID  +++++ER+R  L+E                               
Sbjct: 74  LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKA 133

Query: 204 XCRNMELEERLRQMTAEGQAWLSVAKSHEAVAAGLRATLDQL 245
             +NMELE+ LR+M  E Q W  +A+ +EA+   L  TL+Q+
Sbjct: 134 LNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQV 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,696,117
Number of extensions: 127524
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)