BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0514500 Os02g0514500|AK064485
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0514500  Glycerophosphoryl diester phosphodiesterase fa...   309   6e-85
Os04g0394100  Glycerophosphoryl diester phosphodiesterase fa...   173   5e-44
Os08g0535700  Glycerophosphoryl diester phosphodiesterase fa...   165   1e-41

>Os02g0514500 Glycerophosphoryl diester phosphodiesterase family protein
          Length = 150

 Score =  309 bits (791), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
           MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK
Sbjct: 1   MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60

Query: 61  IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL 120
           IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL
Sbjct: 61  IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL 120

Query: 121 SNGAAKDAATPHFSQCEISFLLRLIPELVQ 150
           SNGAAKDAATPHFSQCEISFLLRLIPELVQ
Sbjct: 121 SNGAAKDAATPHFSQCEISFLLRLIPELVQ 150



>Os04g0394100 Glycerophosphoryl diester phosphodiesterase family protein
          Length = 396

 Score =  173 bits (438), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 21/169 (12%)

Query: 1   MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
           MRKLQ  YPVYFLT GGT+++AD RRNSLE A+KLC+A  ++GIVSEAR + R P+A+ +
Sbjct: 230 MRKLQDRYPVYFLTKGGTQVFADERRNSLEAAVKLCVAGSLRGIVSEARAVLRQPSAIGR 289

Query: 61  IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEI-------TEAVSELITVPEP 113
           IKEA LSLLTYG LNNVP+AVY+Q LMGV+GVIVDLV EI         A +  + VPE 
Sbjct: 290 IKEAGLSLLTYGQLNNVPKAVYLQQLMGVDGVIVDLVAEIAAAVSEFAAAAAAAVPVPER 349

Query: 114 DLNADNLSNG-----------AAKDAATPHFSQCE-ISFLLRLIPELVQ 150
           D ++  +  G           AA+  A+  FS+ E +SFLLRL PELVQ
Sbjct: 350 DSSSSYMDGGGDVGLLEMTSPAARTTAS--FSRREDVSFLLRLTPELVQ 396



>Os08g0535700 Glycerophosphoryl diester phosphodiesterase family protein
          Length = 387

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 113/154 (73%), Gaps = 10/154 (6%)

Query: 1   MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
           MR+LQS YPV FLT GGT  + D RRNSL+EAI++CL   + G+VSE RG+ ++P+AV +
Sbjct: 237 MRELQSLYPVLFLTEGGTAQHKDSRRNSLDEAIRVCLEYELHGLVSEVRGVLKNPSAVLR 296

Query: 61  IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL 120
            KE+NL+LLTYG LNNV EAVY+Q+LMGVNGVIVDLV+EI+ AV++     +P LN   L
Sbjct: 297 AKESNLALLTYGQLNNVWEAVYIQYLMGVNGVIVDLVEEISNAVADF---SKPVLNQSML 353

Query: 121 SNG----AAKDAATPHFSQCEISFLLRLIPELVQ 150
            +G     AK  A   FSQ ++ FLL LIPEL+Q
Sbjct: 354 GSGVDLVGAKHQA---FSQQQLGFLLWLIPELIQ 384



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,774,538
Number of extensions: 174134
Number of successful extensions: 427
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)