FiT-DB / Search/ Help/ Sample detail

Os08g0535700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycerophosphoryl diester phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.94 (0.0505) R2 : 0.773
β1 : -1.49 (0.251) R2dD : 0.0624 R2D : 0.255
β2 : 1.26 (0.0908) R2dC : 0.0994 R2C : 0.0189
β3 : 1.97 (0.125) R2dE : 0.208 R2E : 0.323
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.49 (0.584) R2dD*E : 0.156 R2D*E : 0.388
γ1 : 0.418 (0.116) R2dN8 : 0.0198 R2N8 : -0.0511
σ : 0.705
deviance : 229.24
__
_____
C
peak time of C : 0.112
E
wheather : temperature
threshold : 25.15
memory length : 4826
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.1
open length of G : 1.84

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.4 0.704 9.92 -1.51 1.26 1.98 1.13 -5.36 0.404 0.278 25.12 4833 9.12 1.98
281.02 0.781 10.1 -2.09 1.11 2.45 1.89 -- 0.158 0.666 24.09 17784 9.6 1.7
229.24 0.705 9.94 -1.49 1.26 1.97 -- -5.49 0.418 0.112 25.15 4826 9.1 1.84
294.75 0.8 10.2 -2.61 1.12 2.14 -- -- -0.0495 0.0234 23.89 16355 9.3 2.1
325.44 0.84 9.88 -1.34 -- 1.74 -- -6.17 0.488 -- 25.2 4910 8.85 1.92
383.16 0.918 10.4 -4.44 0.987 -- 2.08 -- -0.952 0.37 -- -- -- --
400.21 0.937 10.4 -4.51 0.993 -- -- -- -0.958 23.7 -- -- -- --
359.6 0.883 10.1 -2.41 -- 2.28 -- -- -0.0498 -- 23.6 16851 9.34 3.81
301.97 0.809 10 -- 1.09 3.92 -- -- 0.307 0.405 21.6 27860 9.68 0.9
462.27 1 10.4 -4.48 -- -- -- -- -0.946 -- -- -- -- --
937 1.43 10.3 -- 0.943 -- -- -- -0.456 23.4 -- -- -- --
371.13 0.897 10 -- -- 3.93 -- -- 0.52 -- 21.61 28432 9.71 2.38
992.81 1.47 10.3 -- -- -- -- -- -0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.15 humidity 90 43200 > th dose independent rect. 13 14
2 248.18 humidity 90 43200 > th dose independent rect. 12 17
15 249.44 humidity 90 43200 > th dose dependent rect. 23 1
17 249.54 radiation 40 43200 < th dose independent rect. 16 16
19 249.62 temperature 20 720 > th dose dependent rect. 24 10
20 249.75 radiation 40 43200 < th dose independent rect. 24 8
21 249.77 humidity 90 43200 > th dose dependent rect. 22 3
22 249.82 radiation 40 43200 < th dose independent rect. 5 3
23 249.85 radiation 40 43200 < th dose independent rect. 22 10
25 249.85 humidity 90 43200 > th dose dependent rect. 13 16
29 249.88 radiation 40 43200 < th dose independent rect. 2 6
36 249.98 humidity 90 43200 > th dose independent sin 15 NA
43 250.08 temperature 20 720 > th dose dependent rect. 2 7
54 250.33 temperature 20 4320 > th dose dependent rect. 3 3
56 250.38 temperature 20 720 > th dose dependent rect. 23 12
67 250.72 radiation 10 43200 < th dose independent rect. 18 14
84 251.24 temperature 25 4320 < th dose independent rect. 9 2
91 251.30 radiation 10 43200 < th dose independent rect. 4 4
92 251.30 radiation 10 43200 < th dose independent rect. 24 8
99 251.32 radiation 10 43200 < th dose independent rect. 20 12
104 251.34 temperature 25 4320 > th dose independent rect. 9 2
109 251.44 radiation 30 43200 > th dose dependent rect. 7 1
127 251.48 humidity 90 43200 > th dose dependent sin 14 NA
132 251.53 humidity 90 43200 < th dose independent rect. 12 16
135 251.60 radiation 30 43200 > th dose independent rect. 7 1
166 251.79 humidity 80 43200 > th dose dependent rect. 9 19
170 251.91 humidity 90 43200 < th dose independent rect. 14 13
185 252.17 humidity 90 43200 < th dose independent rect. 10 19
195 252.28 radiation 1 43200 > th dose dependent rect. 5 1
207 252.49 radiation 10 43200 < th dose independent rect. 6 1
208 252.49 humidity 90 43200 < th dose independent rect. 16 11
217 252.59 humidity 90 43200 > th dose independent rect. 21 5
223 252.68 humidity 80 43200 > th dose dependent rect. 14 1
281 253.25 humidity 90 43200 > th dose dependent rect. 20 11
325 253.69 temperature 15 43200 < th dose independent rect. 24 1
375 254.15 temperature 25 14400 < th dose independent rect. 18 1
393 254.37 humidity 90 43200 < th dose independent sin 15 NA
401 254.46 radiation 10 43200 < th dose independent sin 11 NA
403 254.48 temperature 15 43200 > th dose independent rect. 24 1
407 254.53 humidity 90 43200 > th dose independent rect. 23 1
410 254.59 temperature 25 14400 > th dose independent rect. 18 1
440 254.76 radiation 40 43200 < th dose dependent rect. 5 1
445 254.80 radiation 1 43200 > th dose dependent rect. 18 13
504 255.38 radiation 20 43200 < th dose independent rect. 17 1
512 255.45 humidity 80 43200 > th dose independent rect. 13 2
519 255.49 humidity 90 43200 > th dose dependent rect. 22 18
539 255.70 humidity 90 43200 > th dose independent rect. 21 14
558 255.80 temperature 20 720 > th dose dependent sin 8 NA
607 256.04 radiation 20 43200 < th dose independent rect. 17 6
609 256.05 radiation 20 43200 < th dose independent rect. 17 10
686 256.50 radiation 1 43200 > th dose independent rect. 10 1
689 256.53 radiation 1 43200 < th dose independent rect. 10 1
692 256.53 radiation 1 43200 < th dose dependent rect. 10 1
700 256.58 radiation 40 43200 < th dose dependent rect. 24 6
702 256.62 radiation 40 43200 < th dose independent rect. 15 3
731 256.78 radiation 40 43200 < th dose independent rect. 15 8
732 256.78 radiation 40 43200 < th dose independent rect. 15 12
736 256.80 radiation 40 43200 < th dose independent rect. 15 10
740 256.81 radiation 20 43200 < th dose dependent rect. 22 8
752 256.84 humidity 90 43200 > th dose independent rect. 21 20
758 256.86 radiation 20 43200 < th dose dependent rect. 20 10
857 257.33 humidity 90 43200 < th dose independent rect. 21 4
913 257.60 humidity 90 43200 > th dose dependent no NA NA
919 257.67 humidity 80 43200 < th dose independent rect. 13 2
938 257.76 radiation 30 43200 < th dose dependent rect. 18 13