BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0535700 Os08g0535700|Os08g0535700
(387 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02040.1 | chr3:348505-349909 REVERSE LENGTH=362 356 1e-98
AT5G41080.1 | chr5:16441858-16443835 FORWARD LENGTH=375 344 6e-95
AT5G43300.1 | chr5:17376946-17379070 REVERSE LENGTH=371 318 3e-87
>AT3G02040.1 | chr3:348505-349909 REVERSE LENGTH=362
Length = 361
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 231/323 (71%), Gaps = 13/323 (4%)
Query: 65 PGARIEAVRERENTLLSFGRXXXXXXXXFVEFDVQVTKDGCPIIFHDDFILTQETDAVYA 124
P R A++E N++LSF F+EFDVQVT+DGCPIIFHDDFI ++E VY
Sbjct: 50 PDLRFSALKE--NSILSFN-AASKFPLDFIEFDVQVTRDGCPIIFHDDFIYSEEQGVVYE 106
Query: 125 KRVTDLLLEEFLSYGPQKNSHEISKPLLRRTSDGRVVNWSAKDDDSLCTLQEVFERV-SP 183
KRVT++ L EF+SYGPQ+++ + KPLLR++ +G++ WS DDS CTLQE FE+V +P
Sbjct: 107 KRVTEVCLSEFMSYGPQRDTGKTGKPLLRKSKEGKIHKWSVATDDSFCTLQEAFEKVENP 166
Query: 184 RLGFNIELKFDDDIFYERSQLDRALQAVLQVVSQYASNRPVFFSTFHPDAARIMRELQSL 243
LGFNIELK DD++FY L R L +LQVVS ++R + FS+FHPDAA ++R+LQ+
Sbjct: 167 NLGFNIELKLDDNVFYSSDHLSRLLLPILQVVSDIGNDRTIIFSSFHPDAALLVRKLQTT 226
Query: 244 YPVLFLTEGGTAQHKDSRRNSLDEAIRVCLEYELHGLVSEVRGVLKNPSAVLRAKESNLA 303
YPV FLT GGT + D+RRNSL+EAI+VCLE L G+VSEV+GV +NP+ V + KES L+
Sbjct: 227 YPVFFLTNGGTEMYHDTRRNSLEEAIKVCLEGGLQGIVSEVKGVFRNPALVNKIKESKLS 286
Query: 304 LLTYGQLNNVWEAVYIQYLMGVNGVIVDLVEEISNAVADFSKPVLNQSMLGSGVDLVGAK 363
L+TYG+LNNV EAVY+Q+LMG+ GVIVD VEEI+ AV + KP S D G K
Sbjct: 287 LMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAVREMMKP--------SNRDADGTK 338
Query: 364 HQA-FSQQQLGFLLWLIPELIQQ 385
+ FS ++L FLL LIPELIQ
Sbjct: 339 PKPNFSDRELSFLLKLIPELIQH 361
>AT5G41080.1 | chr5:16441858-16443835 FORWARD LENGTH=375
Length = 374
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 220/314 (70%), Gaps = 4/314 (1%)
Query: 75 RENTLLSFGRXXXXXXXXFVEFDVQVTKDGCPIIFHDDFILTQETDAVYAKRVTDLLLEE 134
+EN++LSF F+EFDVQVTKD CP+IFHDDFI ++E V RVTDL L E
Sbjct: 62 KENSILSFN-SAAKYPIDFIEFDVQVTKDDCPVIFHDDFIYSEENGIVNESRVTDLSLSE 120
Query: 135 FLSYGPQKNSHEISKPLLRRTSDGRVVNWSAKDDDSLCTLQEVFERVSPRLGFNIELKFD 194
FL YGPQK + +I K L+R++ +G+V+ W DDSLCTLQE FE+V LGFNIELKFD
Sbjct: 121 FLLYGPQKETEKIGKTLMRKSKEGKVLKWDVDLDDSLCTLQEAFEQVEQTLGFNIELKFD 180
Query: 195 DDIFYERSQLDRALQAVLQVVSQYASNRPVFFSTFHPDAARIMRELQSLYPVLFLTEGGT 254
D YER L L++VLQVVS YA +RPV FS+F PDAA+++RELQS YPV FLT+ G
Sbjct: 181 DQTVYEREFLVHILRSVLQVVSNYAKDRPVIFSSFQPDAAKLVRELQSTYPVFFLTDAGN 240
Query: 255 AQHKDSRRNSLDEAIRVCLEYELHGLVSEVRGVLKNPSAVLRAKESNLALLTYGQLNNVW 314
H D RRNSL+EAI+VCLE L G+VSEV+GV +NP+A+ + KESNL+LLTYG+LNNV
Sbjct: 241 EIHNDERRNSLEEAIQVCLEGGLQGIVSEVKGVFRNPAAISKIKESNLSLLTYGKLNNVG 300
Query: 315 EAVYIQYLMGVNGVIVDLVEEISNAVADF---SKPVLNQSMLGSGVDLVGAKHQAFSQQQ 371
EAVY+QY+MG++GVIVD VEEI + P + S D V FSQ++
Sbjct: 301 EAVYMQYVMGIDGVIVDFVEEIIESTTRMMIRPPPSSSPLPSPSKDDDVAITRPEFSQKE 360
Query: 372 LGFLLWLIPELIQQ 385
+ FLL L+ +LIQ
Sbjct: 361 ISFLLKLLSQLIQH 374
>AT5G43300.1 | chr5:17376946-17379070 REVERSE LENGTH=371
Length = 370
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 148/268 (55%), Positives = 197/268 (73%), Gaps = 2/268 (0%)
Query: 75 RENTLLSFGRXXXXXXXXFVEFDVQVTKDGCPIIFHDDFILTQETDAVYAKRVTDLLLEE 134
+EN+LLSF F+EFDVQVT+DGCP+IFHD F+ TQE + KRVT++ L E
Sbjct: 59 KENSLLSFN-VAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHE 117
Query: 135 FLSYGPQKNSHEISKPLLRRTSDGRVVNWSAKDDDSLCTLQEVFERVSPRLGFNIELKFD 194
FLSYGPQ++ + KP+ R+T DGR+ W + DD LCTL++ F V LGFNIELKFD
Sbjct: 118 FLSYGPQRDGTNV-KPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFD 176
Query: 195 DDIFYERSQLDRALQAVLQVVSQYASNRPVFFSTFHPDAARIMRELQSLYPVLFLTEGGT 254
D+ Y +L + L +L VV++++ NRP+ FS+FHPDAAR++R +Q YPV FLT GG
Sbjct: 177 DNTVYGEGELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGC 236
Query: 255 AQHKDSRRNSLDEAIRVCLEYELHGLVSEVRGVLKNPSAVLRAKESNLALLTYGQLNNVW 314
+KD RRNSLDEAI++C E L GLVSEV+ +L+ P+A+ R K+S L+LL+YGQLNNV
Sbjct: 237 EIYKDVRRNSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQLNNVV 296
Query: 315 EAVYIQYLMGVNGVIVDLVEEISNAVAD 342
E +Y+QYLMGV GVIVD+V++IS A+A+
Sbjct: 297 EVIYLQYLMGVEGVIVDMVKDISEAIAN 324
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,975,858
Number of extensions: 273487
Number of successful extensions: 619
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 3
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)