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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0394100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycerophosphoryl diester phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0601) R2 : 0.849
β1 : -4.03 (0.303) R2dD : 0.126 R2D : 0.368
β2 : 1.02 (0.133) R2dC : 0.0143 R2C : 0.0195
β3 : -5.14 (0.247) R2dE : 0.385 R2E : 0.704
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.779 (0.153) R2dN8 : 0.0203 R2N8 : 0.0538
σ : 1.05
deviance : 508.74
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_____
C
peak time of C : 11.9
E
wheather : temperature
threshold : 16.42
memory length : 23051
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.79
open length of G : 0.308

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
497.45 1.05 5.23 -3.5 0.922 -4.3 -0.433 10.3 -0.633 11.4 19.67 5802 5.02 0.95
532.42 1.07 5.58 -3.89 1.12 -4.91 -0.41 -- -0.91 11.1 17.01 23042 4.8 1.32
497.56 1.04 5.24 -3.54 0.895 -4.35 -- 10.1 -0.628 11.2 19.46 5807 4.96 1.05
508.74 1.05 5.47 -4.03 1.02 -5.14 -- -- -0.779 11.9 16.42 23051 4.79 0.308
550.85 1.09 5.24 -3.54 -- -4.32 -- 9.89 -0.616 -- 19.46 5802 4.92 1.08
1082.14 1.54 5.91 -8.57 1.02 -- -0.169 -- -2.78 12.1 -- -- -- --
1082.25 1.54 5.91 -8.58 1.02 -- -- -- -2.78 12 -- -- -- --
551.23 1.09 5.48 -3.6 -- -5.45 -- -- -0.788 -- 16.46 23095 4.89 0.0999
600.92 1.14 5.17 -- 0.909 -7.7 -- -- 0.446 11.1 10.96 47520 4.48 0.7
1148.09 1.58 5.93 -8.61 -- -- -- -- -2.79 -- -- -- -- --
3022.78 2.57 5.7 -- 1.14 -- -- -- -1.82 12.5 -- -- -- --
649.65 1.19 5.2 -- -- -7.83 -- -- 0.458 -- 10.71 47520 4.4 0.697
3104.73 2.6 5.72 -- -- -- -- -- -1.84 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 452.87 radiation 10.0 43200 < th dose independent rect. 18 13
3 454.34 radiation 10.0 43200 < th dose independent rect. 1 6
5 454.36 radiation 10.0 43200 < th dose independent rect. 4 3
10 454.49 radiation 10.0 43200 < th dose independent rect. 21 10
14 458.79 radiation 10.0 43200 < th dose independent rect. 17 1
16 460.89 radiation 10.0 43200 < th dose independent rect. 17 3
17 460.91 radiation 10.0 43200 < th dose independent rect. 17 6
22 461.04 radiation 10.0 43200 < th dose independent rect. 17 10
26 461.24 radiation 1.0 43200 < th dose dependent rect. 7 5
27 461.59 radiation 1.0 43200 < th dose independent rect. 8 4
29 461.75 radiation 1.0 43200 > th dose independent rect. 8 4
32 462.32 radiation 1.0 43200 < th dose independent rect. 9 2
34 462.44 radiation 1.0 43200 > th dose independent rect. 9 2
35 462.50 radiation 1.0 43200 < th dose dependent rect. 9 3
36 462.53 radiation 30.0 43200 < th dose independent rect. 16 15
41 464.00 temperature 15.0 43200 > th dose independent rect. 24 1
45 464.94 radiation 1.0 43200 > th dose dependent rect. 5 1
56 465.79 radiation 40.0 43200 < th dose independent rect. 15 17
74 467.86 radiation 40.0 43200 < th dose independent rect. 15 1
77 468.13 radiation 40.0 43200 < th dose independent rect. 15 4
80 468.16 radiation 40.0 43200 < th dose independent rect. 15 8
81 468.17 radiation 40.0 43200 < th dose independent rect. 15 12
112 469.92 radiation 1.0 43200 < th dose dependent rect. 10 1
123 471.62 temperature 15.0 43200 > th dose independent rect. 24 3
125 472.30 radiation 30.0 43200 > th dose dependent rect. 16 16
132 472.77 temperature 20.0 43200 > th dose independent rect. 14 1
133 472.83 radiation 40.0 43200 < th dose independent rect. 5 3
142 472.99 temperature 15.0 43200 > th dose independent rect. 2 1
150 473.26 radiation 40.0 43200 < th dose independent rect. 1 7
155 473.65 radiation 40.0 43200 < th dose independent rect. 21 11
159 473.88 radiation 30.0 43200 > th dose dependent rect. 7 1
178 474.26 temperature 20.0 43200 < th dose independent rect. 14 1
199 476.50 temperature 20.0 43200 < th dose independent rect. 5 1
203 476.96 temperature 15.0 43200 < th dose independent rect. 2 1
211 477.81 temperature 25.0 14400 > th dose independent rect. 10 1
214 477.95 humidity 90.0 43200 > th dose dependent rect. 23 18
228 478.51 temperature 15.0 43200 < th dose independent rect. 24 3
245 479.45 humidity 90.0 43200 > th dose dependent rect. 23 10
252 479.72 radiation 10.0 43200 < th dose dependent rect. 1 5
258 479.81 temperature 20.0 43200 > th dose independent rect. 5 1
261 479.89 radiation 40.0 43200 < th dose dependent rect. 5 1
267 480.06 radiation 10.0 43200 < th dose dependent rect. 19 11
270 480.07 radiation 10.0 43200 < th dose dependent rect. 21 9
288 480.46 radiation 40.0 43200 < th dose dependent rect. 1 5
296 480.62 temperature 25.0 14400 < th dose independent rect. 10 1
338 481.36 humidity 90.0 43200 > th dose dependent rect. 12 18
357 481.87 humidity 90.0 43200 > th dose dependent rect. 2 6
382 482.48 humidity 90.0 43200 > th dose dependent sin 8 NA
406 483.17 radiation 1.0 43200 > th dose dependent rect. 18 1
432 483.55 temperature 20.0 43200 < th dose independent rect. 24 6
576 486.19 humidity 90.0 43200 > th dose dependent rect. 23 2
681 488.04 radiation 10.0 43200 < th dose independent sin 12 NA
695 488.44 precipitation 0.1 43200 < th dose independent rect. 9 1
696 488.44 precipitation 0.1 43200 < th dose dependent rect. 9 1
707 488.69 precipitation 0.1 43200 > th dose independent rect. 9 1
709 488.69 precipitation 0.1 43200 > th dose dependent rect. 9 1
714 488.86 temperature 20.0 43200 < th dose dependent rect. 22 1
733 489.50 temperature 25.0 14400 > th dose independent rect. 8 4
738 489.58 wind 1.0 43200 < th dose dependent rect. 19 10
742 489.69 humidity 90.0 43200 > th dose dependent no NA NA
746 489.78 humidity 90.0 43200 > th dose independent rect. 23 1
864 492.12 temperature 25.0 14400 < th dose independent rect. 8 4
872 492.26 temperature 15.0 43200 < th dose dependent rect. 1 1
937 493.84 humidity 90.0 43200 > th dose dependent rect. 2 23
978 494.99 humidity 90.0 43200 > th dose independent rect. 22 3
982 495.18 radiation 1.0 43200 < th dose dependent rect. 18 20
990 495.70 radiation 1.0 43200 < th dose dependent rect. 4 10
994 495.71 wind 1.0 43200 < th dose dependent rect. 20 8