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Os02g0514500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycerophosphoryl diester phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0782) R2 : 0.73
β1 : -1.84 (0.417) R2dD : 0.0469 R2D : 0.17
β2 : 1.52 (0.148) R2dC : 0.0644 R2C : 0.015
β3 : 3.29 (0.183) R2dE : 0.293 R2E : 0.476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.73 (1.01) R2dD*E : 0.0539 R2D*E : 0.215
γ1 : -0.779 (0.181) R2dN8 : 0.0309 R2N8 : 0.0948
σ : 1.08
deviance : 539.76
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C
peak time of C : 3.62
E
wheather : temperature
threshold : 24.16
memory length : 6334
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.33
open length of G : 4.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
532.97 1.08 11.3 -1.96 1.49 3.24 1.64 -4.51 -0.791 3.57 24.16 6293 6.4 3.77
573.21 1.12 11.4 -2.37 1.49 3.41 2.33 -- -0.782 3.82 23.89 14858 6.53 3.85
539.76 1.08 11.3 -1.84 1.52 3.29 -- -4.73 -0.779 3.62 24.16 6334 6.33 4.1
576.37 1.12 11.5 -2.15 1.27 3.66 -- -- -0.826 4.21 23.5 16332 6.8 4.39
661.8 1.2 11.3 -1.78 -- 3.2 -- -4.42 -0.648 -- 24.1 7544 6.55 4.32
908.12 1.41 11.8 -5.16 1.16 -- 2.24 -- -2.55 4.27 -- -- -- --
921.14 1.42 11.8 -5.18 1.19 -- -- -- -2.56 4.65 -- -- -- --
659.09 1.2 11.5 -1.49 -- 3.7 -- -- -0.972 -- 22.8 23225 7.05 4.83
554.93 1.1 11.4 -- 1.42 4.87 -- -- -0.655 4.15 21.8 23579 6.83 4.18
995.93 1.47 11.8 -5.14 -- -- -- -- -2.53 -- -- -- -- --
1629.4 1.89 11.7 -- 1.09 -- -- -- -1.99 4.78 -- -- -- --
646.45 1.18 11.4 -- -- 4.98 -- -- -0.56 -- 21.75 23353 6.8 4.53
1692.45 1.92 11.7 -- -- -- -- -- -1.96 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 553.30 temperature 25 14400 > th dose independent rect. 10 1
2 554.75 temperature 25 14400 < th dose independent rect. 10 1
40 571.85 humidity 90 43200 > th dose dependent rect. 4 1
49 572.71 humidity 90 43200 > th dose dependent rect. 23 1
52 572.84 humidity 90 43200 > th dose dependent rect. 22 3
55 573.15 humidity 90 43200 > th dose dependent rect. 14 16
93 575.30 radiation 1 43200 > th dose independent rect. 10 2
94 575.30 radiation 1 43200 < th dose independent rect. 10 2
95 575.30 radiation 1 43200 < th dose dependent rect. 10 2
100 575.40 humidity 90 43200 > th dose dependent sin 13 NA
101 575.44 humidity 90 43200 > th dose dependent rect. 21 10
123 575.92 humidity 90 43200 > th dose dependent rect. 3 3
149 576.68 humidity 90 43200 > th dose dependent rect. 2 5
170 577.13 humidity 80 43200 > th dose independent rect. 12 1
184 577.43 humidity 90 43200 > th dose dependent rect. 21 6
204 578.07 humidity 90 43200 > th dose dependent rect. 22 21
213 578.34 humidity 90 43200 > th dose independent rect. 23 1
236 578.75 radiation 1 43200 < th dose dependent rect. 6 6
267 579.35 temperature 25 14400 > th dose independent sin 2 NA
274 579.48 humidity 90 43200 < th dose independent rect. 10 1
276 579.50 humidity 90 43200 > th dose independent rect. 12 17
287 579.66 humidity 90 43200 > th dose independent rect. 15 14
309 579.96 temperature 25 14400 < th dose independent sin 2 NA
324 580.22 temperature 20 14400 > th dose independent rect. 21 9
347 580.53 radiation 1 43200 < th dose dependent rect. 6 3
370 580.99 temperature 20 14400 > th dose independent rect. 22 5
372 581.02 temperature 20 14400 < th dose independent rect. 21 9
374 581.04 temperature 25 14400 < th dose independent rect. 7 12
379 581.13 radiation 1 14400 < th dose dependent rect. 3 2
384 581.18 humidity 90 43200 > th dose dependent rect. 18 22
386 581.20 temperature 20 14400 > th dose independent rect. 24 2
394 581.27 temperature 25 14400 > th dose independent rect. 7 12
406 581.42 humidity 90 43200 > th dose dependent no NA NA
414 581.54 humidity 90 43200 > th dose independent sin 14 NA
462 582.08 temperature 25 14400 > th dose independent rect. 4 15
484 582.37 humidity 90 43200 > th dose dependent rect. 2 23
489 582.44 temperature 25 14400 < th dose independent rect. 4 15
513 582.71 temperature 20 14400 < th dose independent rect. 22 5
520 582.78 temperature 20 14400 > th dose dependent rect. 6 3
539 583.00 temperature 20 14400 < th dose independent rect. 22 3
553 583.08 temperature 20 14400 > th dose dependent rect. 8 1
554 583.09 temperature 20 14400 > th dose independent rect. 4 2
563 583.18 temperature 20 14400 < th dose independent rect. 4 2
615 583.86 humidity 90 43200 > th dose independent rect. 21 14
622 583.95 radiation 10 43200 < th dose independent rect. 5 2
647 584.14 radiation 10 43200 < th dose independent rect. 1 6
658 584.17 temperature 25 14400 > th dose dependent rect. 13 1
664 584.21 radiation 10 43200 < th dose independent rect. 19 12
701 584.57 humidity 80 43200 < th dose independent rect. 12 1
737 585.01 humidity 90 43200 > th dose independent rect. 20 7
800 585.61 radiation 1 43200 < th dose dependent rect. 21 8
837 586.05 temperature 20 14400 > th dose dependent rect. 22 12
876 586.50 radiation 1 43200 < th dose independent rect. 7 7
908 586.90 radiation 1 43200 > th dose independent rect. 7 7
919 587.02 temperature 25 14400 > th dose dependent rect. 12 6
944 587.28 humidity 90 43200 > th dose independent rect. 21 18
957 587.41 temperature 20 14400 > th dose dependent rect. 22 1
983 587.59 temperature 20 14400 > th dose dependent sin 8 NA
996 587.67 temperature 20 43200 < th dose dependent rect. 22 1