BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0514500 Os02g0514500|AK064485
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02040.1 | chr3:348505-349909 REVERSE LENGTH=362 194 1e-50
AT5G41080.1 | chr5:16441858-16443835 FORWARD LENGTH=375 178 1e-45
AT5G43300.1 | chr5:17376946-17379070 REVERSE LENGTH=371 152 9e-38
>AT3G02040.1 | chr3:348505-349909 REVERSE LENGTH=362
Length = 361
Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 115/150 (76%), Gaps = 9/150 (6%)
Query: 1 MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
+RKLQ+TYPV+FLTNGGTE+Y D RRNSLEEAIK+CL G+QGIVSE +G+FR+PA V K
Sbjct: 220 VRKLQTTYPVFFLTNGGTEMYHDTRRNSLEEAIKVCLEGGLQGIVSEVKGVFRNPALVNK 279
Query: 61 IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL 120
IKE+ LSL+TYG LNNV EAVYMQHLMG+ GVIVD V+EITEAV E++ D
Sbjct: 280 IKESKLSLMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAVREMMKPSNRD------ 333
Query: 121 SNGAAKDAATPHFSQCEISFLLRLIPELVQ 150
A P+FS E+SFLL+LIPEL+Q
Sbjct: 334 ---ADGTKPKPNFSDRELSFLLKLIPELIQ 360
>AT5G41080.1 | chr5:16441858-16443835 FORWARD LENGTH=375
Length = 374
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Query: 1 MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
+R+LQSTYPV+FLT+ G EI+ D RRNSLEEAI++CL G+QGIVSE +G+FR+PAA+ K
Sbjct: 223 VRELQSTYPVFFLTDAGNEIHNDERRNSLEEAIQVCLEGGLQGIVSEVKGVFRNPAAISK 282
Query: 61 IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADNL 120
IKE+NLSLLTYG LNNV EAVYMQ++MG++GVIVD V+EI E+ + ++ P P +
Sbjct: 283 IKESNLSLLTYGKLNNVGEAVYMQYVMGIDGVIVDFVEEIIESTTRMMIRPPPSSSPLPS 342
Query: 121 SNGAAKDAAT-PHFSQCEISFLLRLIPELVQ 150
+ A T P FSQ EISFLL+L+ +L+Q
Sbjct: 343 PSKDDDVAITRPEFSQKEISFLLKLLSQLIQ 373
>AT5G43300.1 | chr5:17376946-17379070 REVERSE LENGTH=371
Length = 370
Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 92/119 (77%)
Query: 1 MRKLQSTYPVYFLTNGGTEIYADVRRNSLEEAIKLCLASGMQGIVSEARGIFRHPAAVPK 60
+R +Q YPV+FLTNGG EIY DVRRNSL+EAIKLC SG+QG+VSE + I R P A+ +
Sbjct: 219 IRNMQRCYPVFFLTNGGCEIYKDVRRNSLDEAIKLCKESGLQGLVSEVKAILRTPNAITR 278
Query: 61 IKEANLSLLTYGTLNNVPEAVYMQHLMGVNGVIVDLVQEITEAVSELITVPEPDLNADN 119
+K++ LSLL+YG LNNV E +Y+Q+LMGV GVIVD+V++I+EA++ + E D ++
Sbjct: 279 VKDSKLSLLSYGQLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANIEVTNEDDCEGED 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,061,619
Number of extensions: 111134
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)