BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0479300 Os02g0479300|AB110198
         (172 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0479300  MazG nucleotide pyrophosphohydrolase domain co...   250   3e-67
Os04g0515400  Conserved hypothetical protein                      142   8e-35
Os04g0346800  EAR repeat containing protein                        75   2e-14

>Os02g0479300 MazG nucleotide pyrophosphohydrolase domain containing protein
          Length = 172

 Score =  250 bits (639), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/133 (90%), Positives = 121/133 (90%)

Query: 21  TVGLEELRRRMADFARERDWEQFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPGWDEA 80
           TVGLEELRRRMADFARERDWEQFHSPRN            SEIFQWKGEVPKGLPGWDEA
Sbjct: 21  TVGLEELRRRMADFARERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPGWDEA 80

Query: 81  EKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPASQCKGSSKKHTYYSSR 140
           EKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPASQCKGSSKKHTYYSSR
Sbjct: 81  EKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPASQCKGSSKKHTYYSSR 140

Query: 141 CDVSGNSNGTNHL 153
           CDVSGNSNGTNHL
Sbjct: 141 CDVSGNSNGTNHL 153



>Os04g0515400 Conserved hypothetical protein
          Length = 137

 Score =  142 bits (359), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 78/103 (75%)

Query: 22  VGLEELRRRMADFARERDWEQFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPGWDEAE 81
           V L+EL +++ DFA+ERDWE +H+PRN            SE+F WKGEV KGLPGW E+E
Sbjct: 30  VSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKGLPGWKESE 89

Query: 82  KVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPA 124
           K HLGEEL+DVLLYL+RLSDMCGVDLG AA RK+  NA KYPA
Sbjct: 90  KEHLGEELSDVLLYLIRLSDMCGVDLGDAATRKIVKNAVKYPA 132



>Os04g0346800 EAR repeat containing protein
          Length = 86

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 38/52 (73%)

Query: 22 VGLEELRRRMADFARERDWEQFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKG 73
          V LE LRR+M++FARERDWEQFHSPRN            SE+FQWKGEVPKG
Sbjct: 24 VTLETLRRKMSEFARERDWEQFHSPRNLLLALVGEVGELSEVFQWKGEVPKG 75



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,307,708
Number of extensions: 146094
Number of successful extensions: 306
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)