BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0467300 Os02g0467300|AK064583
         (177 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0467300  Conserved hypothetical protein                      370   e-103
Os03g0164200  Zinc finger, GRF-type domain containing protein     175   1e-44
Os05g0134500                                                      100   5e-22
Os12g0609100  Hypothetical protein                                 82   3e-16

>Os02g0467300 Conserved hypothetical protein
          Length = 177

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MKDKFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPL 60
           MKDKFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPL
Sbjct: 1   MKDKFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPL 60

Query: 61  EEEDQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKM 120
           EEEDQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKM
Sbjct: 61  EEEDQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKM 120

Query: 121 KLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLLFKIIENMYQGC 177
           KLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLLFKIIENMYQGC
Sbjct: 121 KLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLLFKIIENMYQGC 177



>Os03g0164200 Zinc finger, GRF-type domain containing protein
          Length = 155

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 4   KFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPLEEE 63
           K +R GLC++VPMYI+D EY G+E GT+L CRHGL PKRRTAWE  DTGRRFLGCPLEEE
Sbjct: 20  KEYRHGLCMDVPMYIEDSEYCGEELGTRLTCRHGLTPKRRTAWEGPDTGRRFLGCPLEEE 79

Query: 64  DQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKMKLE 123
           DQCD  FWVDE W PR+QK  E +W A++ A+    +K QY W  FV  T  EE+KMKLE
Sbjct: 80  DQCDKFFWVDEPWHPRVQKTLEQMWHAVERATKLTGSK-QYDWCCFVRNTKAEEEKMKLE 138

Query: 124 FQMASQISAIEAKHKK 139
              A  IS +E  +KK
Sbjct: 139 LDTADHISELELAYKK 154



>Os05g0134500 
          Length = 179

 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 14  VPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPLEE-EDQCDALFWV 72
           VP+Y+++ E+ G+E GT+L+C+HGL   RR AWE +DTGRRFLGCPLEE EDQC  + WV
Sbjct: 36  VPLYLEETEWHGEEKGTRLRCKHGLCLARRVAWEGEDTGRRFLGCPLEEDEDQCKFVQWV 95

Query: 73  DEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDK 119
           D EW  R++K    +W  +D    R        +  F  +  +E++K
Sbjct: 96  DPEWDSRVKKTLAGMWDMVDRGVKREAIIQADMFKAFALKDRLEKEK 142



>Os12g0609100 Hypothetical protein
          Length = 96

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 56/69 (81%)

Query: 107 SNFVDRTIVEEDKMKLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLL 166
           +N  DR  VEEDKMKLEF+MA++I A +A +KK+++++ KE + +K+W MGSL+VIA L+
Sbjct: 12  TNGPDRAKVEEDKMKLEFEMAAKILACKATYKKKITKLNKEADHVKSWFMGSLLVIAILM 71

Query: 167 FKIIENMYQ 175
           +KI+E MY+
Sbjct: 72  YKILEYMYE 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,428,797
Number of extensions: 267494
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 4
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)