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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0164200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, GRF-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0345) R2 : 0.00146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0594 (0.0727) R2dN8 : 0.00189 R2N8 : 0.00146
σ : 0.651
deviance : 194.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.92 0.616 3.38 -0.731 0.461 -0.524 -1.07 0.664 -0.261 6.46 24.43 668 -- --
172.3 0.611 3.36 -0.629 0.457 -0.642 -0.941 -- -0.225 6.37 23.11 668 -- --
174.47 0.615 3.36 -0.663 0.439 -0.585 -- 0.313 -0.225 6.38 23.13 816 -- --
174.47 0.615 3.36 -0.643 0.447 -0.638 -- -- -0.222 6.48 23.1 744 -- --
183.23 0.63 3.38 -0.713 -- -0.604 -- 0.464 -0.232 -- 23 1270 -- --
177.56 0.625 3.34 -0.465 0.421 -- -0.934 -- -0.124 6 -- -- -- --
179.7 0.628 3.34 -0.474 0.416 -- -- -- -0.12 5.98 -- -- -- --
183.33 0.631 3.37 -0.641 -- -0.755 -- -- -0.198 -- 21.33 1293 -- --
183.75 0.631 3.33 -- 0.416 -0.561 -- -- -0.0815 6.22 17.9 655 -- --
188.66 0.642 3.34 -0.461 -- -- -- -- -0.111 -- -- -- -- --
185.61 0.637 3.32 -- 0.409 -- -- -- -0.0673 6.04 -- -- -- --
192.02 0.645 3.34 -- -- -0.662 -- -- -0.0819 -- 17.9 1187 -- --
194.28 0.651 3.33 -- -- -- -- -- -0.0594 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.39 wind 1 10 > th dose dependent rect. 4 3
2 167.82 temperature 30 720 > th dose dependent rect. 18 1
17 168.84 wind 7 1440 > th dose dependent rect. 1 9
18 169.06 temperature 30 90 > th dose dependent rect. 10 1
20 169.20 wind 1 30 > th dose independent rect. 4 3
23 169.25 wind 7 1440 > th dose dependent rect. 23 11
26 169.32 wind 7 1440 > th dose independent rect. 3 5
29 169.34 wind 7 1440 > th dose independent rect. 1 7
45 169.49 wind 7 1440 < th dose independent rect. 1 9
47 169.54 wind 7 1440 < th dose independent rect. 9 1
49 169.63 wind 7 1440 > th dose dependent rect. 9 1
53 169.92 temperature 15 1440 > th dose independent rect. 6 2
55 169.96 wind 9 1440 > th dose independent rect. 21 13
56 170.11 temperature 30 10 > th dose dependent rect. 12 1
59 170.13 wind 7 1440 > th dose independent rect. 7 1
62 170.14 wind 7 1440 > th dose dependent rect. 7 3
69 170.25 wind 7 1440 > th dose independent rect. 9 1
70 170.27 wind 7 1440 > th dose independent rect. 1 9
71 170.28 wind 7 1440 < th dose independent rect. 22 12
87 170.74 temperature 30 90 > th dose independent rect. 10 1
91 170.84 wind 1 14400 < th dose dependent rect. 5 1
93 170.88 humidity 50 1440 < th dose independent rect. 16 1
97 170.97 temperature 15 14400 > th dose independent rect. 8 1
100 171.00 humidity 50 1440 < th dose dependent rect. 16 1
105 171.06 wind 3 4320 > th dose dependent rect. 5 2
110 171.19 wind 7 270 > th dose dependent rect. 2 8
111 171.22 wind 7 1440 < th dose independent rect. 2 4
114 171.25 wind 9 1440 < th dose independent rect. 23 6
123 171.32 temperature 30 90 < th dose dependent rect. 7 21
125 171.34 wind 1 10 > th dose independent rect. 13 18
134 171.39 wind 3 4320 > th dose dependent rect. 3 4
139 171.41 temperature 10 270 > th dose dependent rect. 9 22
143 171.52 wind 7 4320 < th dose independent rect. 3 1
149 171.54 temperature 10 720 > th dose dependent rect. 19 20
153 171.56 temperature 20 270 > th dose dependent rect. 3 1
157 171.59 wind 3 4320 > th dose dependent rect. 24 7
163 171.62 temperature 15 30 > th dose dependent rect. 13 18
166 171.64 wind 1 14400 < th dose independent rect. 5 2
167 171.64 temperature 20 30 > th dose dependent rect. 3 4
172 171.65 temperature 20 30 > th dose independent rect. 13 18
179 171.70 wind 7 10 > th dose dependent rect. 12 1
192 171.77 temperature 30 1440 < th dose independent rect. 9 1
194 171.78 wind 1 14400 > th dose independent rect. 5 2
204 171.78 temperature 10 270 > th dose dependent rect. 1 22
205 171.79 wind 9 4320 < th dose independent rect. 21 3
206 171.80 wind 7 4320 > th dose independent rect. 3 1
207 171.80 wind 9 4320 > th dose dependent rect. 16 14
211 171.81 wind 5 4320 > th dose dependent rect. 3 1
227 171.85 temperature 25 720 < th dose dependent rect. 21 21
236 171.87 temperature 15 14400 > th dose independent rect. 7 3
248 171.89 wind 1 270 < th dose dependent rect. 2 1
257 171.91 temperature 20 10 < th dose dependent rect. 7 22
285 171.95 wind 9 4320 < th dose independent rect. 17 12
287 171.95 wind 9 14400 > th dose dependent rect. 16 1
288 171.95 temperature 20 10 < th dose dependent rect. 9 20
292 171.96 temperature 30 1440 > th dose independent rect. 9 1
296 171.96 temperature 30 1440 < th dose independent rect. 23 11
326 172.00 wind 9 4320 > th dose dependent rect. 16 7
336 172.01 wind 9 14400 > th dose independent rect. 19 1
337 172.01 wind 5 4320 < th dose independent rect. 5 1
338 172.01 temperature 30 10 > th dose independent rect. 11 1
343 172.01 temperature 25 720 < th dose dependent rect. 16 22
368 172.03 wind 9 4320 > th dose dependent rect. 16 10
401 172.05 wind 9 14400 > th dose independent rect. 16 1
402 172.05 wind 9 4320 < th dose independent rect. 17 5
414 172.06 temperature 25 720 < th dose dependent no NA NA
421 172.06 temperature 10 720 > th dose dependent rect. 19 12
427 172.06 temperature 25 720 < th dose dependent rect. 13 23
429 172.07 wind 7 1440 > th dose independent sin 8 NA
430 172.07 wind 7 1440 < th dose independent sin 8 NA
431 172.07 wind 9 4320 > th dose independent rect. 21 1
433 172.07 wind 9 4320 > th dose dependent rect. 21 1
465 172.09 wind 9 4320 > th dose independent rect. 17 12
475 172.09 temperature 25 720 < th dose dependent rect. 8 23
521 172.12 wind 9 4320 > th dose dependent rect. 21 3
529 172.12 temperature 25 720 < th dose dependent rect. 11 23
542 172.13 wind 9 4320 > th dose dependent rect. 11 1
569 172.15 wind 9 4320 > th dose independent rect. 21 3
578 172.15 wind 5 14400 > th dose dependent rect. 22 1
585 172.16 wind 1 1440 > th dose independent rect. 19 2
590 172.16 wind 5 1440 > th dose independent rect. 21 10
619 172.18 wind 5 1440 < th dose independent rect. 21 10
641 172.19 wind 9 4320 < th dose independent rect. 17 9
642 172.19 wind 9 4320 > th dose dependent sin 12 NA
669 172.21 wind 9 4320 < th dose independent rect. 11 1
672 172.21 radiation 40 1440 < th dose independent rect. 6 2
701 172.23 wind 9 4320 > th dose independent rect. 18 4
741 172.24 temperature 30 1440 < th dose independent rect. 20 14
763 172.25 wind 7 1440 > th dose dependent sin 8 NA
797 172.27 wind 9 4320 > th dose independent rect. 17 6
830 172.28 radiation 10 10 < th dose dependent rect. 6 1
857 172.30 temperature 30 1440 < th dose independent rect. 6 2
861 172.30 humidity 50 1440 > th dose independent rect. 6 2
866 172.30 atmosphere 995 1440 > th dose independent rect. 6 2
867 172.30 atmosphere 1015 1440 < th dose independent rect. 6 2
869 172.30 temperature 10 1440 > th dose independent rect. 8 22
894 172.32 wind 9 4320 > th dose independent rect. 17 9
896 172.32 wind 5 1440 > th dose dependent rect. 21 10
924 172.34 wind 9 14400 > th dose dependent rect. 19 1
957 172.36 wind 1 43200 < th dose dependent rect. 9 1
960 172.36 temperature 20 1440 < th dose dependent rect. 4 8
961 172.36 temperature 20 1440 < th dose dependent rect. 3 10
1000 172.38 wind 9 4320 > th dose independent sin 12 NA