BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0437200 Os02g0437200|AY900120
         (283 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0437200  Similar to SNAP-34                                  493   e-140
Os02g0529500  Similar to SNAP25-like protein C (Fragment)         272   2e-73
Os03g0212400  Similar to SNAP-28                                  248   4e-66

>Os02g0437200 Similar to SNAP-34
          Length = 283

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 248/283 (87%)

Query: 1   MSGRRSFFASKKPSRSSNPFDSDSDDGGREQXXXXXXXXXXXXDQXXXXXXXXXXXXXXX 60
           MSGRRSFFASKKPSRSSNPFDSDSDDGGREQ            DQ               
Sbjct: 1   MSGRRSFFASKKPSRSSNPFDSDSDDGGREQRPARASSVPPPADQRGSLFGGGDGFSASS 60

Query: 61  XXXXXXXXNDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVT 120
                   NDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVT
Sbjct: 61  AAARSRYRNDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVT 120

Query: 121 IHQQGQQITRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFI 180
           IHQQGQQITRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFI
Sbjct: 121 IHQQGQQITRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFI 180

Query: 181 RKGSHLEQRHKLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKG 240
           RKGSHLEQRHKLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKG
Sbjct: 181 RKGSHLEQRHKLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKG 240

Query: 241 MAVDMGTEIDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283
           MAVDMGTEIDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK
Sbjct: 241 MAVDMGTEIDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283



>Os02g0529500 Similar to SNAP25-like protein C (Fragment)
          Length = 259

 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 169/215 (78%), Gaps = 2/215 (0%)

Query: 69  NDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQI 128
           +DFRD+GG+E QSVQELE YAAYKAEETT  + GC+RIAE +R+ A+ +LVT+++QGQQI
Sbjct: 47  DDFRDSGGLEQQSVQELENYAAYKAEETTDALGGCLRIAENIREDAANTLVTLNKQGQQI 106

Query: 129 TRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQ 188
           +RTH   ++IDQDLS+ E LLG LGG FSK WKPKK  +I+GP    DDSF +K SH+EQ
Sbjct: 107 SRTHEKAVEIDQDLSKGESLLGSLGGFFSKPWKPKKTRQIKGPAHVSDDSFKKKASHIEQ 166

Query: 189 RHKLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGTE 248
           R KLGLS  P   +A + ++EPT+A++KV++EK KQDD L DLS +L +LKGMA DMG+E
Sbjct: 167 REKLGLS--PSGKSANRSYAEPTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSE 224

Query: 249 IDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283
           +DRQ KAL D + D DELN R+KGAN RAR+L+ K
Sbjct: 225 LDRQNKALDDLQGDVDELNSRVKGANQRARKLIEK 259



>Os03g0212400 Similar to SNAP-28
          Length = 251

 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 158/204 (77%), Gaps = 2/204 (0%)

Query: 80  QSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQITRTHMMTLDID 139
           QS+QELE YA  K EET+++V  CVR AE +R+ A+K+LVT+H+QG+QITRTH +  DI+
Sbjct: 50  QSIQELEDYAVDKVEETSRKVNDCVRAAEAIREDATKTLVTLHRQGEQITRTHRVAADIE 109

Query: 140 QDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQRHKLGLSDHPP 199
            DLS SEKLLG LGG+FSK WKPK+N +I+GP +++++SF    +H+EQR +LG+S    
Sbjct: 110 HDLSMSEKLLGSLGGLFSKTWKPKRNQQIKGP-ISQNNSFTSSANHMEQRQRLGISST-R 167

Query: 200 QSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGTEIDRQTKALGDS 259
           Q +  Q H  P +A++KV++E AKQDD LSDLSN+L ELKGMA+DMGTEI+RQ K+L   
Sbjct: 168 QPSPNQVHRSPATAIEKVQVEIAKQDDALSDLSNMLGELKGMALDMGTEIERQNKSLDAF 227

Query: 260 EKDYDELNFRIKGANTRARRLLGK 283
             D DELNFR+KGAN R RRLLGK
Sbjct: 228 GDDVDELNFRVKGANQRGRRLLGK 251



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,214,872
Number of extensions: 293416
Number of successful extensions: 722
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 3
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)