BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0318400 Os02g0318400|AK064642
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0318400  Conserved hypothetical protein                      257   3e-69
Os02g0317100  Conserved hypothetical protein                       92   2e-19
Os02g0318200  Conserved hypothetical protein                       88   3e-18
Os02g0317200  Cyclin-like F-box domain containing protein          82   2e-16

>Os02g0318400 Conserved hypothetical protein
          Length = 174

 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/151 (86%), Positives = 131/151 (86%)

Query: 1   MFSGVCKPWRSIAXXXXXXHPPCNLPWLLMPSTAATSLFCVVSEDTHRPGLLGDARCARF 60
           MFSGVCKPWRSIA      HPPCNLPWLLMPSTAATSLFCVVSEDTHRPGLLGDARCARF
Sbjct: 1   MFSGVCKPWRSIAQQQQQQHPPCNLPWLLMPSTAATSLFCVVSEDTHRPGLLGDARCARF 60

Query: 61  CGSFPGAWLAAELPESRGRGPVLLDLCTGECVALPRGCEAGEXXXXXXXXXXXXXXGRGP 120
           CGSFPGAWLAAELPESRGRGPVLLDLCTGECVALPRGCEAGE              GRGP
Sbjct: 61  CGSFPGAWLAAELPESRGRGPVLLDLCTGECVALPRGCEAGESSSADSASSPSTTSGRGP 120

Query: 121 PCPLCMYFLVLARNLVLMVIRFVSTRETAFD 151
           PCPLCMYFLVLARNLVLMVIRFVSTRETAFD
Sbjct: 121 PCPLCMYFLVLARNLVLMVIRFVSTRETAFD 151



>Os02g0317100 Conserved hypothetical protein
          Length = 449

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 63/104 (60%), Gaps = 11/104 (10%)

Query: 1   MFSGVCKPWRSIAXXXXXXHPPCNLPWLLMPSTAATSLFCVVSEDTHR-PGLLGDARCAR 59
           MFSGVC  WR+IA      H P   PWL MPST ATS FCV  E TH+ P L  +AR AR
Sbjct: 31  MFSGVCTRWRTIAMR----HLPPMQPWLFMPSTNATSFFCVACERTHQGPCLPDNARGAR 86

Query: 60  FCGSFPGAWL-AAELPESR-----GRGPVLLDLCTGECVALPRG 97
           FCG+    W+ AAE+P         R P LL+LCTGECV LPR 
Sbjct: 87  FCGAHLEGWVAAAEIPHDDRSVPGNRAPALLNLCTGECVLLPRS 130



>Os02g0318200 Conserved hypothetical protein
          Length = 425

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 62/104 (59%), Gaps = 11/104 (10%)

Query: 1   MFSGVCKPWRSIAXXXXXXHPPCNLPWLLMPSTAATSLFCVVSEDTHR-PGLLGDARCAR 59
           MFSGVC  WR+IA      H P   PWL MPST ATS FCV  E TH+ P L  +AR AR
Sbjct: 26  MFSGVCTRWRTIAMR----HLPPMQPWLFMPSTNATSFFCVACERTHQGPCLPDNARGAR 81

Query: 60  FCGSFPGAWL-AAELPESR-----GRGPVLLDLCTGECVALPRG 97
           FCG+    W+ AAE+P         R P LL+LCTGE V LPR 
Sbjct: 82  FCGAHLEGWVAAAEIPHDDRSVPGNRAPALLNLCTGERVLLPRS 125



>Os02g0317200 Cyclin-like F-box domain containing protein
          Length = 412

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 59/104 (56%), Gaps = 12/104 (11%)

Query: 1   MFSGVCKPWRSIAXXXXXXHPPCNLPWLLMPSTAATSLFCVVSEDTHR---PGLLGDARC 57
           MFSGVC+ WRS+A      H     PWL MPS  A S FCV  E TH    P L  DAR 
Sbjct: 31  MFSGVCRRWRSVASA----HLTPMQPWLFMPSATAISFFCVACERTHHHQSPRLPDDARG 86

Query: 58  ARFCGSFPGAWL-AAELPESR----GRGPVLLDLCTGECVALPR 96
           ARFCG+F   W+ AAE+P        R P LL+L TGE V LPR
Sbjct: 87  ARFCGTFLECWVAAAEIPYDEPLPWNRFPALLNLRTGERVLLPR 130



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.143    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,353,404
Number of extensions: 200551
Number of successful extensions: 570
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 4
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)