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Os02g0318400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.03 (0.0258) R2 : 0.728
β1 : 3.05 (0.0959) R2dD : 0.691 R2D : 0.559
β2 : 0.785 (0.065) R2dC : 0.0873 R2C : 0.0786
β3 : -0.841 (0.0775) R2dE : 0.0956 R2E : -0.0224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.0609) R2dN8 : 0.0085 R2N8 : -0.0424
σ : 0.466
deviance : 99.93
__
_____
C
peak time of C : 18
E
wheather : temperature
threshold : 26.33
memory length : 9512
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.68 0.46 6.98 3.83 0.836 -1.18 -1.35 3.32 0.163 18.6 24.77 2390 -- --
96.32 0.457 7.01 3.03 0.785 -0.884 -1.22 -- 0.207 18.2 26.39 9567 -- --
100.02 0.466 6.98 3.82 0.848 -1.18 -- 3.39 0.124 18.4 25.36 2354 -- --
99.93 0.466 7.03 3.05 0.785 -0.841 -- -- 0.173 18 26.33 9512 -- --
129.53 0.53 6.97 3.66 -- -1.05 -- 2.19 0.152 -- 23.7 2750 -- --
122.57 0.519 7.1 2.72 0.79 -- -1.12 -- -0.145 17.9 -- -- -- --
125.39 0.524 7.1 2.73 0.786 -- -- -- -0.149 17.6 -- -- -- --
130.04 0.531 7.01 3.08 -- -0.864 -- -- 0.163 -- 24.8 9921 -- --
240.43 0.722 7.26 -- 0.386 1.49 -- -- -0.711 19.4 -65.59 47520 -- --
157.44 0.586 7.09 2.7 -- -- -- -- -0.168 -- -- -- -- --
321.36 0.839 7.17 -- 0.743 -- -- -- -0.452 17.8 -- -- -- --
256.06 0.745 7.26 -- -- 1.56 -- -- -0.934 -- -62.82 47520 -- --
349.97 0.873 7.15 -- -- -- -- -- -0.467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.46 radiation 20 4320 < th dose dependent rect. 18 2
16 94.60 wind 7 43200 > th dose independent rect. 5 9
19 94.63 wind 7 43200 < th dose independent rect. 5 9
34 95.00 wind 7 43200 > th dose independent rect. 10 2
38 95.07 wind 5 43200 > th dose dependent rect. 9 5
42 95.15 wind 7 43200 < th dose independent rect. 10 2
44 95.16 wind 5 43200 > th dose dependent rect. 5 10
48 95.19 radiation 30 14400 > th dose independent rect. 16 16
53 95.24 radiation 1 4320 < th dose independent rect. 18 2
60 95.27 radiation 1 4320 > th dose independent rect. 18 11
68 95.36 radiation 1 4320 > th dose independent rect. 18 1
84 95.40 radiation 1 720 > th dose dependent rect. 18 11
90 95.52 radiation 1 14400 > th dose independent rect. 5 1
99 95.56 radiation 1 14400 < th dose independent rect. 5 1
118 95.63 radiation 1 4320 < th dose independent rect. 18 11
135 95.69 humidity 90 43200 > th dose independent rect. 9 1
155 95.83 radiation 1 4320 > th dose dependent rect. 17 12
160 95.85 radiation 1 4320 > th dose dependent rect. 17 2
175 95.87 radiation 30 14400 > th dose dependent rect. 15 17
209 96.05 wind 7 43200 > th dose independent sin 5 NA
217 96.10 radiation 20 4320 < th dose independent rect. 16 16
222 96.13 wind 3 43200 < th dose independent rect. 3 1
223 96.13 temperature 20 1440 > th dose dependent rect. 7 3
227 96.15 wind 7 43200 < th dose independent sin 5 NA
257 96.26 wind 9 43200 < th dose dependent rect. 8 5
259 96.27 radiation 1 14400 < th dose independent rect. 24 6
260 96.27 radiation 1 14400 < th dose independent rect. 22 8
285 96.39 wind 3 43200 > th dose independent rect. 3 1
286 96.39 radiation 30 14400 > th dose independent rect. 7 1
301 96.39 radiation 1 720 > th dose dependent rect. 18 1
317 96.41 wind 5 43200 > th dose dependent sin 3 NA
341 96.50 humidity 90 43200 < th dose independent rect. 9 2
372 96.57 wind 9 43200 < th dose dependent rect. 10 2
389 96.62 humidity 90 43200 > th dose dependent rect. 9 1
407 96.66 wind 9 43200 < th dose dependent rect. 3 11
466 96.79 radiation 20 14400 < th dose independent rect. 16 4
470 96.79 wind 7 43200 > th dose dependent rect. 19 20
517 96.87 atmosphere 1005 43200 > th dose independent rect. 18 1
541 96.92 temperature 20 43200 > th dose independent rect. 20 1
572 96.98 radiation 1 4320 > th dose independent rect. 18 16
576 96.98 radiation 1 4320 > th dose dependent rect. 16 16
583 97.00 humidity 90 43200 < th dose independent rect. 1 18
587 97.00 radiation 20 4320 < th dose dependent rect. 17 14
608 97.06 radiation 1 4320 < th dose dependent rect. 18 15
615 97.08 humidity 90 43200 > th dose independent rect. 2 16
622 97.09 atmosphere 1005 43200 < th dose independent rect. 18 1
633 97.11 humidity 90 43200 < th dose independent rect. 2 10
638 97.12 temperature 20 43200 < th dose independent rect. 20 1
664 97.17 radiation 40 4320 < th dose dependent rect. 16 16
676 97.19 radiation 1 4320 < th dose independent rect. 18 16
677 97.19 humidity 90 43200 < th dose independent rect. 1 21
691 97.22 humidity 90 43200 > th dose independent rect. 2 10
695 97.22 humidity 90 43200 > th dose independent rect. 2 21
801 97.39 humidity 90 43200 < th dose independent sin 4 NA
875 97.48 humidity 90 14400 < th dose independent rect. 21 6
886 97.50 humidity 90 43200 > th dose independent sin 4 NA
896 97.52 humidity 90 43200 < th dose independent rect. 21 22
901 97.53 humidity 90 43200 > th dose independent rect. 21 2
927 97.56 humidity 90 43200 < th dose independent rect. 7 21
928 97.56 humidity 90 43200 < th dose independent rect. 7 23
953 97.58 humidity 90 43200 > th dose independent rect. 21 22
965 97.59 humidity 90 43200 < th dose independent rect. 15 23
978 97.61 humidity 90 43200 < th dose independent rect. 5 23
982 97.62 humidity 90 43200 < th dose independent no NA NA
990 97.62 humidity 90 43200 < th dose independent rect. 13 23