BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0260700 Os02g0260700|AK100835
         (558 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0260700  Similar to GAMYB-binding protein (Fragment)        1002   0.0  
Os06g0507400  Similar to GAMYB-binding protein (Fragment)         822   0.0  
Os06g0507300  Similar to GAMYB-binding protein                    171   1e-42

>Os02g0260700 Similar to GAMYB-binding protein (Fragment)
          Length = 558

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/558 (89%), Positives = 497/558 (89%)

Query: 1   MAGSXXXXXXXXXMDPDFSXXXXXXPSFEFAFNSVNFSDRVLRIEVVAGXXXXXXXHAPG 60
           MAGS         MDPDFS      PSFEFAFNSVNFSDRVLRIEVVAG       HAPG
Sbjct: 1   MAGSEAAAAQEAEMDPDFSGGGGGGPSFEFAFNSVNFSDRVLRIEVVAGDDDDDDDHAPG 60

Query: 61  SSRDGGAGSLSDWARHXXXXXXXXXXXXXSEAVMPDQINCKVEPEECDAYEENQEEPVAX 120
           SSRDGGAGSLSDWARH             SEAVMPDQINCKVEPEECDAYEENQEEPVA 
Sbjct: 61  SSRDGGAGSLSDWARHRKRRREELLKEKESEAVMPDQINCKVEPEECDAYEENQEEPVAM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXVSTPVLRVKNIYISSAILAAKSPFFFKLFSNGMKE 180
                                    VSTPVLRVKNIYISSAILAAKSPFFFKLFSNGMKE
Sbjct: 121 MDDSPPSVGPDGDDGPSMDSPWSGGVSTPVLRVKNIYISSAILAAKSPFFFKLFSNGMKE 180

Query: 181 SDERQATLRITDSEENALMELLSFMYSGKLTSTDPTLLLDILMAADKFEVISCMRYCSQL 240
           SDERQATLRITDSEENALMELLSFMYSGKLTSTDPTLLLDILMAADKFEVISCMRYCSQL
Sbjct: 181 SDERQATLRITDSEENALMELLSFMYSGKLTSTDPTLLLDILMAADKFEVISCMRYCSQL 240

Query: 241 LTSLTMTTESALLYLDLPCSISMAAAVQPLTDAAKEYLSNKYKDLTKFQDEVMNIPLAGI 300
           LTSLTMTTESALLYLDLPCSISMAAAVQPLTDAAKEYLSNKYKDLTKFQDEVMNIPLAGI
Sbjct: 241 LTSLTMTTESALLYLDLPCSISMAAAVQPLTDAAKEYLSNKYKDLTKFQDEVMNIPLAGI 300

Query: 301 EAILSSNDLQVASEDAIYDFLIRWARAQYPKSEERREILSSRLLPLVRFSHMTCRKLRKV 360
           EAILSSNDLQVASEDAIYDFLIRWARAQYPKSEERREILSSRLLPLVRFSHMTCRKLRKV
Sbjct: 301 EAILSSNDLQVASEDAIYDFLIRWARAQYPKSEERREILSSRLLPLVRFSHMTCRKLRKV 360

Query: 361 LICTDLDHEQATKCVTEALLYKADAPHRQRALAADVTTCQKFAERAYKYRPLKVVEFDRP 420
           LICTDLDHEQATKCVTEALLYKADAPHRQRALAADVTTCQKFAERAYKYRPLKVVEFDRP
Sbjct: 361 LICTDLDHEQATKCVTEALLYKADAPHRQRALAADVTTCQKFAERAYKYRPLKVVEFDRP 420

Query: 421 YPQCIAYLDLKREECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGMQ 480
           YPQCIAYLDLKREECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGMQ
Sbjct: 421 YPQCIAYLDLKREECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGMQ 480

Query: 481 EKGSMSVTVDYEFAARTRPSGEFVSKYKGNYTFTGGKAVGYRNLFAIPWSTFMADDSLFF 540
           EKGSMSVTVDYEFAARTRPSGEFVSKYKGNYTFTGGKAVGYRNLFAIPWSTFMADDSLFF
Sbjct: 481 EKGSMSVTVDYEFAARTRPSGEFVSKYKGNYTFTGGKAVGYRNLFAIPWSTFMADDSLFF 540

Query: 541 LDGVLHLRAELTIKQPTV 558
           LDGVLHLRAELTIKQPTV
Sbjct: 541 LDGVLHLRAELTIKQPTV 558



>Os06g0507400 Similar to GAMYB-binding protein (Fragment)
          Length = 536

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/543 (76%), Positives = 441/543 (81%), Gaps = 7/543 (1%)

Query: 14  MDPDFSXXXXXXPSFEFAFNSVNFSDRVLRIEVVAGXXXXXXXHAPGSSRDGGAGSLSDW 73
           MDPDFS      PSF FAFNSVNFSDRVLRIE+VAG        A G        SL+DW
Sbjct: 1   MDPDFSRASRG-PSFAFAFNSVNFSDRVLRIEIVAGDDAAGAKGAAGEG----CSSLADW 55

Query: 74  ARHXXXXXXXXXXXXXSEAVMPDQINCKVEPEECDAYEENQEEPVAXXXXXXXXXXXXXX 133
           A H                   D   CKVE EECD YEEN EEPVA              
Sbjct: 56  A-HQRKRRREELRREKESGKYTDLETCKVEAEECDTYEENNEEPVAMIEESPPDIGQDGE 114

Query: 134 XXXXXXXXXXXXVSTPVLRVKNIYISSAILAAKSPFFFKLFSNGMKESDERQATLRITDS 193
                         T VLRVK+IYISSAILAA+SPFF+KLFSNGMKESD+R ATLRIT S
Sbjct: 115 DGDSCDSSWSMEC-TQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITAS 173

Query: 194 EENALMELLSFMYSGKLTSTDPTLLLDILMAADKFEVISCMRYCSQLLTSLTMTTESALL 253
           EENALMELLSFMYSGKLT+  PTLLLDILM ADKFEV+SCMR+CSQLL SL MTTESALL
Sbjct: 174 EENALMELLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTTESALL 233

Query: 254 YLDLPCSISMAAAVQPLTDAAKEYLSNKYKDLTKFQDEVMNIPLAGIEAILSSNDLQVAS 313
           YLDLP SISMAAAVQPLTD AK +L+NKYKDLTK QDE MNIPLAGIEAIL SNDLQVAS
Sbjct: 234 YLDLPSSISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSNDLQVAS 293

Query: 314 EDAIYDFLIRWARAQYPKSEERREILSSRLLPLVRFSHMTCRKLRKVLICTDLDHEQATK 373
           EDAIYDF+I+WAR+QYPK EERREIL +RLLPLVRF HMTCRKLRKVL C DLDHEQATK
Sbjct: 294 EDAIYDFVIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDHEQATK 353

Query: 374 CVTEALLYKADAPHRQRALAADVTTCQKFAERAYKYRPLKVVEFDRPYPQCIAYLDLKRE 433
           CVTEALLYKADAPHRQR LAADV TC+K+AERAYKYRPLKVVEFDRPYPQCIAYLDLKRE
Sbjct: 354 CVTEALLYKADAPHRQRTLAADVLTCRKYAERAYKYRPLKVVEFDRPYPQCIAYLDLKRE 413

Query: 434 ECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGMQEKGSMSVTVDYEF 493
           ECSRLFPSGR+YSQAFHLAGQGFFLSAHCNM+QQS F+CFGLFLGMQEKGS SVTVDYEF
Sbjct: 414 ECSRLFPSGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTSVTVDYEF 473

Query: 494 AARTRPSGEFVSKYKGNYTFTGGKAVGYRNLFAIPWSTFMADDSLFFLDGVLHLRAELTI 553
           AARTRPSGEFVSKYKG YTFTGGKAVGYRNLFAIPWS+FMADDSLFF++GVLHLRAELTI
Sbjct: 474 AARTRPSGEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTI 533

Query: 554 KQP 556
           KQP
Sbjct: 534 KQP 536



>Os06g0507300 Similar to GAMYB-binding protein
          Length = 201

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 17/150 (11%)

Query: 423 QCIA-YLDLKREECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGM-- 479
           +C+A Y+DL REEC RLFPSGR+ SQ   LAG+ F+L+A CNM+Q+ TF CFGLFL M  
Sbjct: 50  RCVAAYMDLTREECGRLFPSGRLRSQPLRLAGRPFYLTARCNMDQRDTFRCFGLFLAMEV 109

Query: 480 -----QEKGS----MSVTVDYEFAARTR-PSG-EFVSKYKGNYTFTGGKAVGYRNLFAIP 528
                +E+GS     SVTV+Y+FAARTR  SG EFVS YKG+YTF  GK+ GYRNL  +P
Sbjct: 110 DDEEEEEEGSPSPAASVTVEYDFAARTRQQSGDEFVSMYKGHYTFAAGKSCGYRNLLGMP 169

Query: 529 WSTFMAD---DSLFFLDGVLHLRAELTIKQ 555
           W++FM D   DS+FF+DGVLHLRAEL +K+
Sbjct: 170 WASFMGDGGGDSVFFIDGVLHLRAELCVKE 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,660,556
Number of extensions: 574425
Number of successful extensions: 1043
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 452
Effective length of database: 11,501,117
Effective search space: 5198504884
Effective search space used: 5198504884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)