BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0244600 Os02g0244600|AK069852
         (359 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0244600  Ataxin-2, C-terminal domain containing protein      367   e-101
Os01g0209400  Ataxin-2, C-terminal domain containing protein      313   9e-86
Os08g0116400  RNA-binding region RNP-1 (RNA recognition moti...   284   6e-77

>Os02g0244600 Ataxin-2, C-terminal domain containing protein
          Length = 359

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/194 (92%), Positives = 179/194 (92%)

Query: 166 ADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFXXXXX 225
           ADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEF     
Sbjct: 166 ADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDAG 225

Query: 226 XXXXXXXXXXMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEE 285
                     MLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEE
Sbjct: 226 ARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEE 285

Query: 286 DVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPS 345
           DVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPS
Sbjct: 286 DVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPS 345

Query: 346 KTPVRPRSPRVMSN 359
           KTPVRPRSPRVMSN
Sbjct: 346 KTPVRPRSPRVMSN 359



>Os01g0209400 Ataxin-2, C-terminal domain containing protein
          Length = 308

 Score =  313 bits (803), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 165/194 (85%)

Query: 166 ADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFXXXXX 225
           ADREDS+RRTVYVSDID  VTE++LA++F+NCGQVVDCRICGDPHSVLRFAFIEF     
Sbjct: 115 ADREDSIRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADEEG 174

Query: 226 XXXXXXXXXXMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEE 285
                     MLG+YPVRVLPSKTAILPVNPKFLPRTEDEKEMV RTVYCTNIDKKVT+ 
Sbjct: 175 ARTALNLGGTMLGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQL 234

Query: 286 DVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPS 345
           DVK FF++LCG+VSRLRLLGD VHST IAFVEF  AE AI+ALN SGM+LGTLP+RVSPS
Sbjct: 235 DVKNFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAECAIMALNCSGMILGTLPVRVSPS 294

Query: 346 KTPVRPRSPRVMSN 359
           KTPV+PR  RV SN
Sbjct: 295 KTPVKPRLNRVASN 308




 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 261 RTEDEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQ 320
           R  D ++ + RTVY ++ID  VTEE +   F   CG+V   R+ GD       AF+EFA 
Sbjct: 113 RHADREDSIRRTVYVSDIDHTVTEERLADIFAN-CGQVVDCRICGDPHSVLRFAFIEFAD 171

Query: 321 AESAILALNYSGMVLGTLPIRVSPSKTPVRPRSPRVM 357
            E A  ALN  G +LG  P+RV PSKT + P +P+ +
Sbjct: 172 EEGARTALNLGGTMLGFYPVRVLPSKTAILPVNPKFL 208



>Os08g0116400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 283

 Score =  284 bits (727), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 157/190 (82%)

Query: 166 ADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFXXXXX 225
           A R++ +RRTVYVSDID QVTE++LA +F NCGQVVDCR+CGDP+SVLRFAFIEF     
Sbjct: 90  AQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEES 149

Query: 226 XXXXXXXXXXMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEE 285
                     +LGYYPVRVLPSKTAI PVNP FLPR++DE+EM +RT+YCTNIDKKV++ 
Sbjct: 150 ARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQA 209

Query: 286 DVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPS 345
           DVK+FF+ +CG+V RLRLLGDY HST IAFVEF  AESA  ALN SG++LG+LPIRVSPS
Sbjct: 210 DVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPS 269

Query: 346 KTPVRPRSPR 355
           KTPVRPR+PR
Sbjct: 270 KTPVRPRAPR 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,372,447
Number of extensions: 197838
Number of successful extensions: 863
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)