Os08g0116400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0116400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.8 | 0.229 | 13.6 | 0.631 | 0.613 | 0.465 | -0.161 | 0.385 | 0.488 | 2.01 | 49.36 | 1242 | -- | -- |
| 24.01 | 0.228 | 13.6 | 0.659 | 0.601 | 0.493 | -0.233 | -- | 0.496 | 2.07 | 43.39 | 1262 | -- | -- |
| 23.88 | 0.228 | 13.6 | 0.63 | 0.618 | 0.468 | -- | 0.452 | 0.488 | 1.94 | 49.95 | 1229 | -- | -- |
| 24.18 | 0.229 | 13.6 | 0.68 | 0.613 | 0.52 | -- | -- | 0.496 | 1.99 | 40.25 | 1249 | -- | -- |
| 34.68 | 0.276 | 13.6 | 0.661 | -- | 0.541 | -- | -0.182 | 0.495 | -- | 51.2 | 7561 | -- | -- |
| 29.11 | 0.253 | 13.6 | 0.641 | 0.522 | -- | -0.299 | -- | 0.476 | 2.16 | -- | -- | -- | -- |
| 29.44 | 0.254 | 13.6 | 0.649 | 0.521 | -- | -- | -- | 0.478 | 2.1 | -- | -- | -- | -- |
| 33.78 | 0.272 | 13.6 | 0.655 | -- | 0.489 | -- | -- | 0.506 | -- | 60.12 | 1717 | -- | -- |
| 33.54 | 0.27 | 13.6 | -- | 0.566 | 0.589 | -- | -- | 0.506 | 1.74 | 34.06 | 26893 | -- | -- |
| 45.67 | 0.316 | 13.6 | 0.671 | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
| 40.55 | 0.298 | 13.6 | -- | 0.533 | -- | -- | -- | 0.405 | 2.13 | -- | -- | -- | -- |
| 43.76 | 0.309 | 13.6 | -- | -- | 0.466 | -- | -- | 0.46 | -- | 71.74 | 1713 | -- | -- |
| 57.55 | 0.354 | 13.6 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.30 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 23.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 3 | 23.36 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 6 | 23.44 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 8 | 23.46 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 12 | 23.52 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 19 | 23.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 31 | 23.62 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 38 | 23.64 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 52 | 23.64 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 98 | 23.69 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 119 | 23.71 | humidity | 80.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 121 | 23.71 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 152 | 23.74 | humidity | 80.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 284 | 23.82 | humidity | 70.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 293 | 23.82 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 338 | 23.85 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 345 | 23.85 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 380 | 23.87 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 397 | 23.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 423 | 23.89 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 484 | 23.92 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 522 | 23.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 530 | 23.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 536 | 23.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 537 | 23.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 609 | 23.98 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 627 | 23.99 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 650 | 24.00 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 659 | 24.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 687 | 24.01 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 720 | 24.03 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 772 | 24.05 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 802 | 24.05 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 803 | 24.05 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 812 | 24.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 823 | 24.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 876 | 24.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 906 | 24.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 913 | 24.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 925 | 24.10 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 933 | 24.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 938 | 24.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 944 | 24.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |