BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0232400 Os02g0232400|AK120755
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0232400 Similar to Citrate synthase, glyoxysomal precu... 1014 0.0
Os02g0194100 Similar to Citrate synthase (EC 4.1.3.7) 115 9e-26
Os11g0538900 Similar to Citrate synthase (EC 4.1.3.7) 106 4e-23
>Os02g0232400 Similar to Citrate synthase, glyoxysomal precursor (EC 2.3.3.1)
(GCS)
Length = 539
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/539 (92%), Positives = 499/539 (92%)
Query: 1 IPAKRKPNPNKPQPXXXXXXXXXXXXXXXHLCSALLSSPMDRARLAVLSAHLXXXXXXXX 60
IPAKRKPNPNKPQP HLCSALLSSPMDRARLAVLSAHL
Sbjct: 1 IPAKRKPNPNKPQPATQRRRVVQATTTRAHLCSALLSSPMDRARLAVLSAHLASPAAACG 60
Query: 61 XXXXXGPLEXXXXXXXXXXXXLAVVDGRTGKRYEVKVSDEGTVRATDFKKITTGKDDKGL 120
GPLE LAVVDGRTGKRYEVKVSDEGTVRATDFKKITTGKDDKGL
Sbjct: 61 EADAAGPLERSAASAGARGGALAVVDGRTGKRYEVKVSDEGTVRATDFKKITTGKDDKGL 120
Query: 121 KIYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGSLPTQSQ 180
KIYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGSLPTQSQ
Sbjct: 121 KIYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGSLPTQSQ 180
Query: 181 LAGWEFAISQHSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYK 240
LAGWEFAISQHSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYK
Sbjct: 181 LAGWEFAISQHSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYK 240
Query: 241 SKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPILPTNSLSYSENFLYMLDSLGDKEYKPN 300
SKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPILPTNSLSYSENFLYMLDSLGDKEYKPN
Sbjct: 241 SKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPILPTNSLSYSENFLYMLDSLGDKEYKPN 300
Query: 301 PRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVFTALSGAVGALYGPLHGGANEAVL 360
PRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVFTALSGAVGALYGPLHGGANEAVL
Sbjct: 301 PRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVFTALSGAVGALYGPLHGGANEAVL 360
Query: 361 KMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 420
KMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL
Sbjct: 361 KMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 420
Query: 421 IEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHW 480
IEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHW
Sbjct: 421 IEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHW 480
Query: 481 KESLDDPDTKIMRPQQVYTGVWLRHYTPVRERVPASQGEQLGQIATSNATRRRRAGSAL 539
KESLDDPDTKIMRPQQVYTGVWLRHYTPVRERVPASQGEQLGQIATSNATRRRRAGSAL
Sbjct: 481 KESLDDPDTKIMRPQQVYTGVWLRHYTPVRERVPASQGEQLGQIATSNATRRRRAGSAL 539
>Os02g0194100 Similar to Citrate synthase (EC 4.1.3.7)
Length = 472
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 181/392 (46%), Gaps = 40/392 (10%)
Query: 140 IDGDEGILRYRGYPIEE--------LAESSSFVE-VAYLLMYGSLPTQSQLAGWEFAISQ 190
+D DEGI R+RG I E + + E + +LL+ G +PT+ Q+ ++
Sbjct: 92 LDPDEGI-RFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELAS 150
Query: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIV 250
S+VP + + I A+P AHPM + + L V +G K + + +
Sbjct: 151 RSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCL 210
Query: 251 RVLGKAPTIAAAAYLRL-AGRPPILPTNSLSYSENFLYMLDSLGDKEYKPNPRLARVLDI 309
++ + P +A+ Y R+ G I N+L Y+ NF +ML +P++ ++ +
Sbjct: 211 NLIARLPAVASYVYRRIFKGGKTIAADNALDYAANFSHMLGF-------DDPKMLELMRL 263
Query: 310 LFILHAEHEMNCSTAAARHLASSGV-DVFTALSGAVGALYGPLHGGANEAVL----KMLN 364
+H +HE +A HL S + D + + + A+ L GPLHG AN+ VL ++
Sbjct: 264 YITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIG 323
Query: 365 EIGS---VENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLI 421
E GS + + +++ + + GFGH V + DPR R+ A + DPL
Sbjct: 324 ETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTDPRYTCQREFA---LKYLPEDPLF 380
Query: 422 EVAVALEKAA---LSDDYFVKRKLYPNVDFYSGLIYRAMGFP-TEFFPVLFAIPRMAGWL 477
++ L + L++ VK +PNVD +SG++ G ++ VLF + R G
Sbjct: 381 QLVSKLYEVVPPILTELGKVKNP-WPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIG 439
Query: 478 AH--WKESLDDPDTKIMRPQQVYTGVWLRHYT 507
+ W +L P + RP+ V T WL ++
Sbjct: 440 SQLIWDRALGLP---LERPKSV-TMEWLENHC 467
>Os11g0538900 Similar to Citrate synthase (EC 4.1.3.7)
Length = 472
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 30/350 (8%)
Query: 173 GSLPTQSQLAGWEFAISQHSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPA 232
G +PT+ Q+ + S+VP + I A+P AHPM + + L V
Sbjct: 133 GKVPTKEQVDALSKELVTRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAY 192
Query: 233 LRGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRL-AGRPPILPTNSLSYSENFLYMLDS 291
+G K + + + ++ + P +A+ Y R+ I N+L Y+ NF +ML
Sbjct: 193 DKGMPKSKFWEPTYEDCLNLIARLPPVASYVYRRIFKDGKTIAADNALDYAANFSHMLGF 252
Query: 292 LGDKEYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGV-DVFTALSGAVGALYGP 350
+P++ ++ + +H +HE +A HL S + D + + + A+ L GP
Sbjct: 253 -------DDPKMLELMRLYVTIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGP 305
Query: 351 LHGGANEAVL----KMLNEIGS---VENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKV 403
LHG AN+ VL ++ E GS + + +++ + + GFGH V + DPR
Sbjct: 306 LHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTDPRYTC 365
Query: 404 IRKLAEEVFSIVGRDPLIEVAVALEKAA---LSDDYFVKRKLYPNVDFYSGLIYRAMGFP 460
R+ A + DPL ++ L + L++ VK +PNVD +SG++ G
Sbjct: 366 QREFA---LKYLPEDPLFQLVSKLYEVVPPILTELGKVKNP-WPNVDAHSGVLLNHFGLS 421
Query: 461 -TEFFPVLFAIPRMAGWLAH--WKESLDDPDTKIMRPQQVYTGVWLRHYT 507
++ VLF + R G + W +L P + RP+ V T WL ++
Sbjct: 422 EARYYTVLFGVSRSIGIGSQLIWDRALGLP---LERPKSV-TMEWLENHC 467
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,731,781
Number of extensions: 756549
Number of successful extensions: 1481
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1472
Number of HSP's successfully gapped: 3
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)