Os02g0194100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Citrate synthase (EC 4.1.3.7).
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Os02g0194100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Citrate synthase (EC 4.1.3.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.11 | 0.226 | 9.96 | -0.543 | 0.381 | 0.518 | -0.354 | 0.154 | 0.0144 | 5.47 | 21.6 | 929 | -- | -- |
| 23.12 | 0.224 | 9.96 | -0.509 | 0.38 | 0.505 | -0.311 | -- | 0.0302 | 5.44 | 21.7 | 918 | -- | -- |
| 23.3 | 0.225 | 9.96 | -0.536 | 0.384 | 0.506 | -- | 0.103 | 0.0204 | 5.73 | 21.9 | 964 | -- | -- |
| 23.32 | 0.225 | 9.96 | -0.514 | 0.387 | 0.493 | -- | -- | 0.0272 | 5.73 | 21.8 | 963 | -- | -- |
| 29.89 | 0.255 | 9.96 | -0.489 | -- | 0.513 | -- | -0.0377 | 0.0421 | -- | 21.8 | 690 | -- | -- |
| 32.27 | 0.266 | 9.99 | -0.696 | 0.41 | -- | -0.113 | -- | -0.127 | 6.44 | -- | -- | -- | -- |
| 32.3 | 0.266 | 9.99 | -0.697 | 0.409 | -- | -- | -- | -0.126 | 6.52 | -- | -- | -- | -- |
| 29.89 | 0.255 | 9.96 | -0.495 | -- | 0.512 | -- | -- | 0.0411 | -- | 21.8 | 691 | -- | -- |
| 28.27 | 0.248 | 9.92 | -- | 0.376 | 0.651 | -- | -- | 0.117 | 5.81 | 21.8 | 2463 | -- | -- |
| 41 | 0.299 | 10 | -0.687 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 45.1 | 0.314 | 9.97 | -- | 0.4 | -- | -- | -- | -0.0484 | 6.62 | -- | -- | -- | -- |
| 35.89 | 0.279 | 9.94 | -- | -- | 0.641 | -- | -- | 0.118 | -- | 21.58 | 738 | -- | -- |
| 53.45 | 0.341 | 9.98 | -- | -- | -- | -- | -- | -0.0414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 3 | 23.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 4 | 23.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 8 | 23.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 14 | 23.29 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 37 | 23.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 50 | 23.49 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 78 | 23.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 84 | 23.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 149 | 23.72 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 169 | 23.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 239 | 23.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 262 | 23.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 353 | 24.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 396 | 24.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 449 | 24.17 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 466 | 24.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 579 | 24.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 614 | 24.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 619 | 24.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 631 | 24.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 650 | 24.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 669 | 24.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 895 | 24.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |