BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0194100 Os02g0194100|AF302906
(472 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0194100 Similar to Citrate synthase (EC 4.1.3.7) 942 0.0
Os11g0538900 Similar to Citrate synthase (EC 4.1.3.7) 915 0.0
Os02g0232400 Similar to Citrate synthase, glyoxysomal precu... 116 4e-26
Os11g0623601 102 7e-22
Os02g0800450 74 2e-13
>Os02g0194100 Similar to Citrate synthase (EC 4.1.3.7)
Length = 472
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/472 (97%), Positives = 459/472 (97%)
Query: 1 MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKS 60
MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKS
Sbjct: 1 MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKS 60
Query: 61 EHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDXX 120
EHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKD
Sbjct: 61 EHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGE 120
Query: 121 XXXXXXXXXXXTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVM 180
TGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVM
Sbjct: 121 PLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVM 180
Query: 181 ALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNAL 240
ALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNAL
Sbjct: 181 ALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNAL 240
Query: 241 DYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN 300
DYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN
Sbjct: 241 DYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN 300
Query: 301 GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD 360
GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD
Sbjct: 301 GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD 360
Query: 361 PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL 420
PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL
Sbjct: 361 PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL 420
Query: 421 SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA 472
SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA
Sbjct: 421 SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA 472
>Os11g0538900 Similar to Citrate synthase (EC 4.1.3.7)
Length = 472
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/472 (94%), Positives = 451/472 (95%)
Query: 1 MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKS 60
MAFFRGLTAVSR+RSR+AQEATTLGGVRWLQMQS SDLDLKSQLQELIPEQQDRLKKLKS
Sbjct: 1 MAFFRGLTAVSRIRSRMAQEATTLGGVRWLQMQSPSDLDLKSQLQELIPEQQDRLKKLKS 60
Query: 61 EHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDXX 120
EHGKVQLGNITVDMVLGGMRGM GMLWETSLLDP+EGIRFRGLSIPECQKVLPTA+K
Sbjct: 61 EHGKVQLGNITVDMVLGGMRGMIGMLWETSLLDPEEGIRFRGLSIPECQKVLPTAIKGGE 120
Query: 121 XXXXXXXXXXXTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVM 180
TGKVPTKEQVDALSKEL +RSSVPGHVY+AIDALPVTAHPMTQFTTGVM
Sbjct: 121 PLPEGLLWLLLTGKVPTKEQVDALSKELVTRSSVPGHVYKAIDALPVTAHPMTQFTTGVM 180
Query: 181 ALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNAL 240
ALQVESEFQKAYDKGM KSKFWEPTYEDCLNLIARLP VASYVYRRIFK GKTIAADNAL
Sbjct: 181 ALQVESEFQKAYDKGMPKSKFWEPTYEDCLNLIARLPPVASYVYRRIFKDGKTIAADNAL 240
Query: 241 DYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN 300
DYAANFSHMLGFDDPKMLELMRLY+TIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN
Sbjct: 241 DYAANFSHMLGFDDPKMLELMRLYVTIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALN 300
Query: 301 GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD 360
GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD
Sbjct: 301 GLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTD 360
Query: 361 PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL 420
PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL
Sbjct: 361 PRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGL 420
Query: 421 SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA 472
SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKK AA
Sbjct: 421 SEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKAAA 472
>Os02g0232400 Similar to Citrate synthase, glyoxysomal precursor (EC 2.3.3.1)
(GCS)
Length = 539
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 174/392 (44%), Gaps = 40/392 (10%)
Query: 92 LDPDEGI-RFRGLSIPECQKVLPTAVKDXXXXXXXXXXXXXTGKVPTKEQVDALSKELAS 150
+D DEGI R+RG I E + G +PT+ Q+ ++
Sbjct: 140 IDGDEGILRYRGYPIEELAE---------SSSFVEVAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 151 RSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCL 210
S+VP + + I A+P AHPM + + L V +G K + + +
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIV 250
Query: 211 NLIARLPAVASYVYRRIFKGGKTIAADNALDYAANFSHMLGF-------DDPKMLELMRL 263
++ + P +A+ Y R+ G I N+L Y+ NF +ML +P++ ++ +
Sbjct: 251 RVLGKAPTIAAAAYLRL-AGRPPILPTNSLSYSENFLYMLDSLGDKEYKPNPRLARVLDI 309
Query: 264 YITIHTDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIG 323
+H +HE +A HL S + D + + + A+ L GPLHG AN+ VL ++
Sbjct: 310 LFILHAEHEMNCSTAAARHLASSGV-DVFTALSGAVGALYGPLHGGANEAVL----KMLN 364
Query: 324 ETGSDVTTDQLKEYVWKTLKSGKVVPGFGHGVLRKTDPRYTCQREFA---LKYLPEDPLF 380
E GS + + +++ + + GFGH V + DPR R+ A + DPL
Sbjct: 365 EIGS---VENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLI 421
Query: 381 QLVSKLYEVVPPILTELGKVKNP-WPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIG 439
++ L + L++ VK +PNVD +SG++ G ++ VLF + R G
Sbjct: 422 EVAVALEKAA---LSDDYFVKRKLYPNVDFYSGLIYRAMGFP-TEFFPVLFAIPRMAGWL 477
Query: 440 SQLIWDRALGLP---LERPKSV-TMEWLENHC 467
+ W +L P + RP+ V T WL ++
Sbjct: 478 AH--WKESLDDPDTKIMRPQQVYTGVWLRHYT 507
>Os11g0623601
Length = 272
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 88/160 (55%), Gaps = 34/160 (21%)
Query: 284 VGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLK 343
VGSAL PYLS AALNG AGPLHG++NQEVLLWIK + G+ GSD+ TD LKE V T K
Sbjct: 60 VGSALGGPYLSLVAALNGFAGPLHGMSNQEVLLWIKPITGQIGSDIRTDLLKECVENT-K 118
Query: 344 SGKVVPGFGHGVLRKTDPRYTCQREFALKYLPEDPLFQLVSKLYEVVPPI-LTELGKVKN 402
K G V YL E+ +F KLYEVVPP+ L+ +++N
Sbjct: 119 QWK-----GISV-----------------YLFEEEIF----KLYEVVPPMSLSLASRIEN 152
Query: 403 PWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQL 442
+ N L +S + FGV R+IG+GSQ+
Sbjct: 153 LFQNEYLSKACLPLFVCIS------LFFGVLRTIGVGSQI 186
>Os02g0800450
Length = 93
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 51/100 (51%), Gaps = 36/100 (36%)
Query: 182 LQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNALD 241
+ V SE QKAY KGM KS+ IFK KTIA DNALD
Sbjct: 2 VHVGSEVQKAYGKGMPKSE--------------------------IFKDWKTIAGDNALD 35
Query: 242 YAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTG 281
YAA FSHMLGFDD + +DHEG NVSAHTG
Sbjct: 36 YAAEFSHMLGFDD----------LVSSSDHEGQNVSAHTG 65
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,552,005
Number of extensions: 629419
Number of successful extensions: 1291
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 5
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)