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Os11g0538900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Citrate synthase (EC 4.1.3.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0138) R2 : 0.545
β1 : -1.18 (0.0507) R2dD : 0.557 R2D : 0.475
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.214 (0.0295) R2dN8 : 0.0702 R2N8 : -0.0119
σ : 0.26
deviance : 30.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.98 0.23 11 -1.11 0.193 0.0383 0.553 -1.39 -0.204 22.5 63 15 -- --
26.67 0.241 11 -1.1 0.131 -0.242 -0.299 -- -0.265 0.462 64.57 19535 -- --
24.74 0.232 11 -1.14 0.191 0.0313 -- -1.1 -0.208 22.6 62.7 56 -- --
26.14 0.238 11 -1.14 0.176 -0.367 -- -- -0.308 22.7 50.11 16516 -- --
26.56 0.241 11 -1.14 -- 0.13 -- -1.07 -0.203 -- 62.65 51 -- --
28.29 0.249 11 -1.19 0.189 -- -0.271 -- -0.218 23.7 -- -- -- --
28.49 0.25 11 -1.18 0.197 -- -- -- -0.215 22.8 -- -- -- --
27.58 0.245 11 -1.09 -- -0.426 -- -- -0.292 -- 45 23921 -- --
42.15 0.302 11 -- 0.186 -1.34 -- -- -0.191 22.3 12.79 47520 -- --
30.88 0.26 11 -1.18 -- -- -- -- -0.214 -- -- -- -- --
65.14 0.378 11 -- 0.189 -- -- -- -0.0839 22.3 -- -- -- --
44.26 0.31 11 -- -- -1.35 -- -- -0.191 -- 9.818 47520 -- --
67.32 0.383 10.9 -- -- -- -- -- -0.0836 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.59 temperature 30.0 4320 < th dose independent rect. 2 7
2 23.67 humidity 60.0 30 > th dose dependent rect. 5 23
3 23.68 humidity 60.0 10 > th dose dependent rect. 1 23
12 23.91 temperature 30.0 14400 < th dose independent rect. 5 4
19 23.93 temperature 30.0 14400 > th dose independent rect. 8 1
21 23.93 temperature 30.0 14400 < th dose independent rect. 7 2
39 23.94 humidity 60.0 10 > th dose dependent rect. 7 23
43 23.95 humidity 60.0 30 > th dose dependent rect. 3 23
44 23.97 temperature 30.0 14400 > th dose dependent rect. 8 1
60 23.98 humidity 60.0 10 > th dose dependent rect. 9 23
63 24.03 humidity 60.0 10 > th dose dependent no NA NA
70 24.07 wind 1.0 43200 > th dose independent rect. 3 8
73 24.09 wind 1.0 14400 < th dose independent rect. 4 2
74 24.09 humidity 60.0 30 > th dose dependent rect. 11 23
75 24.09 humidity 60.0 10 > th dose dependent rect. 17 23
76 24.10 humidity 60.0 10 > th dose dependent rect. 15 23
83 24.13 humidity 60.0 10 > th dose dependent rect. 13 23
88 24.16 wind 1.0 43200 > th dose independent rect. 1 10
92 24.18 wind 1.0 43200 < th dose independent rect. 3 8
95 24.19 wind 9.0 43200 < th dose dependent rect. 7 1
100 24.19 humidity 60.0 10 > th dose dependent rect. 21 23
102 24.20 wind 1.0 43200 < th dose independent rect. 1 10
115 24.24 wind 1.0 14400 > th dose independent rect. 4 2
117 24.24 wind 1.0 43200 < th dose independent rect. 1 8
133 24.27 humidity 60.0 10 > th dose dependent rect. 19 23
135 24.28 humidity 70.0 90 > th dose dependent rect. 23 22
142 24.30 humidity 60.0 10 > th dose dependent rect. 23 23
143 24.31 wind 1.0 43200 < th dose dependent rect. 3 8
151 24.32 wind 1.0 43200 < th dose dependent rect. 3 6
157 24.33 humidity 60.0 10 > th dose dependent sin 2 NA
158 24.33 humidity 70.0 90 > th dose dependent rect. 23 20
163 24.34 wind 1.0 43200 > th dose dependent rect. 7 1
164 24.34 radiation 40.0 720 > th dose dependent rect. 11 2
171 24.35 wind 1.0 43200 < th dose dependent rect. 1 8
218 24.44 wind 1.0 14400 < th dose independent rect. 2 3
225 24.45 wind 1.0 14400 > th dose independent rect. 2 3
234 24.47 humidity 70.0 90 > th dose dependent rect. 23 18
240 24.48 humidity 60.0 1440 > th dose dependent rect. 11 1
241 24.48 wind 1.0 14400 < th dose dependent rect. 2 3
259 24.50 wind 9.0 43200 < th dose dependent rect. 5 3
271 24.52 humidity 80.0 90 > th dose independent rect. 23 20
273 24.52 temperature 25.0 720 > th dose dependent rect. 11 2
296 24.56 wind 1.0 43200 > th dose dependent rect. 5 3
323 24.59 humidity 80.0 90 > th dose independent rect. 23 18
324 24.59 humidity 80.0 30 < th dose independent rect. 19 23
352 24.62 humidity 80.0 4320 > th dose independent rect. 18 7
353 24.62 humidity 80.0 90 > th dose independent rect. 23 16
359 24.63 humidity 80.0 30 > th dose independent sin 3 NA
361 24.63 humidity 80.0 4320 < th dose independent rect. 18 7
368 24.63 humidity 90.0 720 > th dose dependent rect. 8 16
375 24.64 humidity 80.0 30 > th dose independent rect. 1 23
397 24.64 radiation 30.0 720 > th dose dependent rect. 14 23
401 24.65 temperature 25.0 10 > th dose independent rect. 24 12
405 24.65 radiation 20.0 720 > th dose dependent rect. 9 4
415 24.66 temperature 25.0 10 < th dose independent sin 5 NA
427 24.67 humidity 80.0 30 > th dose independent rect. 5 23
433 24.67 humidity 60.0 30 > th dose dependent rect. 1 14
434 24.67 humidity 60.0 90 > th dose dependent rect. 1 16
445 24.68 atmosphere 1010.0 270 < th dose dependent rect. 8 14
477 24.70 humidity 90.0 30 < th dose dependent rect. 13 23
491 24.71 humidity 70.0 30 > th dose dependent rect. 9 21
521 24.72 radiation 40.0 90 < th dose dependent rect. 23 16
539 24.73 humidity 90.0 30 < th dose dependent rect. 19 23
542 24.74 humidity 80.0 90 > th dose independent rect. 23 22
556 24.75 humidity 80.0 30 > th dose independent rect. 3 23
563 24.75 radiation 40.0 90 < th dose dependent rect. 23 14
565 24.75 atmosphere 1015.0 30 < th dose dependent rect. 10 15
591 24.76 humidity 90.0 30 < th dose dependent rect. 15 23
593 24.77 humidity 70.0 1440 > th dose independent rect. 11 1
596 24.77 humidity 80.0 90 < th dose independent rect. 17 23
605 24.77 temperature 10.0 90 > th dose dependent rect. 7 16
606 24.77 radiation 40.0 270 < th dose dependent rect. 21 20
625 24.78 humidity 80.0 30 > th dose independent rect. 7 23
634 24.78 humidity 90.0 30 < th dose dependent rect. 6 19
653 24.79 humidity 80.0 90 > th dose independent rect. 21 22
654 24.79 humidity 80.0 90 > th dose independent rect. 17 23
679 24.80 temperature 25.0 10 < th dose independent rect. 24 14
682 24.80 humidity 80.0 90 > th dose independent rect. 15 23
683 24.80 humidity 80.0 30 < th dose independent rect. 13 23
693 24.80 radiation 30.0 720 > th dose dependent rect. 7 6
696 24.80 radiation 20.0 720 > th dose dependent rect. 9 8
734 24.80 humidity 90.0 30 < th dose dependent rect. 17 23
735 24.80 humidity 90.0 30 < th dose dependent rect. 23 23
737 24.81 wind 3.0 43200 < th dose independent rect. 7 1
739 24.81 humidity 80.0 90 > th dose independent rect. 19 23
741 24.81 radiation 30.0 720 < th dose independent rect. 13 23
747 24.81 temperature 15.0 30 > th dose dependent rect. 9 14
761 24.82 radiation 40.0 10 < th dose independent sin 2 NA
794 24.82 humidity 60.0 720 > th dose dependent rect. 9 17
795 24.82 radiation 40.0 90 < th dose dependent rect. 23 18
799 24.82 atmosphere 995.0 90 > th dose dependent rect. 23 20
808 24.82 humidity 90.0 30 < th dose dependent rect. 6 23
810 24.83 humidity 60.0 14400 < th dose independent rect. 13 1
817 24.83 radiation 30.0 720 < th dose independent rect. 21 22
851 24.83 humidity 90.0 30 < th dose dependent rect. 4 21
866 24.84 humidity 80.0 30 > th dose independent no NA NA
868 24.84 humidity 80.0 1440 < th dose independent rect. 11 1
875 24.84 radiation 40.0 270 < th dose independent rect. 21 20
876 24.84 humidity 80.0 30 > th dose independent rect. 9 23
877 24.84 humidity 80.0 30 > th dose independent rect. 13 23
885 24.84 precipitation 0.1 43200 > th dose dependent rect. 16 4
907 24.85 humidity 80.0 30 < th dose independent sin 0 NA
915 24.85 humidity 80.0 30 > th dose independent rect. 11 23
919 24.85 humidity 80.0 30 < th dose independent rect. 15 23
959 24.85 humidity 90.0 30 < th dose dependent rect. 21 23
963 24.86 humidity 60.0 14400 > th dose independent rect. 12 1
972 24.86 radiation 10.0 43200 < th dose dependent rect. 20 7
997 24.87 wind 3.0 14400 < th dose dependent rect. 2 1